miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 156829 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 135831 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 131991 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 28192 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 15341 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 122671 0.71 0.995828
Target:  5'- aAGUGaGUGUAUAGCUUAGaGaUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUC-C-ACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 179785 0.72 0.993289
Target:  5'- aAGUGuaUAUAUGGCUUcGGUGUUAAc -3'
miRNA:   3'- cUCACccAUAUAUCGAAuCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 131696 0.72 0.993289
Target:  5'- uGAGcauaUAUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- -CUCacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 23448 0.72 0.992209
Target:  5'- aAGUGaGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCAcaauu -5'
28284 5' -45.8 NC_005902.1 + 88593 0.72 0.990997
Target:  5'- aAGUGuaauaaGUaaGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACc-----CA--UAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 94727 0.72 0.988129
Target:  5'- uGAGUGcGUAUAUAGUUUAaGUGUUAAa -3'
miRNA:   3'- -CUCACcCAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 169572 0.72 0.988129
Target:  5'- --aUGcGaGUGUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- cucAC-C-CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 109949 0.72 0.988129
Target:  5'- cGAGUGaaUAUAUAGCUUAGGUcUUAAa -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCAcAAUU- -5'
28284 5' -45.8 NC_005902.1 + 135216 0.73 0.986453
Target:  5'- aGAGUGaGUAUAUAGUUUAGaUGUUAAa -3'
miRNA:   3'- -CUCACcCAUAUAUCGAAUCcACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 147628 0.73 0.986453
Target:  5'- aAGUGaGUGUAUAGCUUAGaUGUUAAu -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCcACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 39611 0.73 0.986453
Target:  5'- uAGUGaau-UAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACccauAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 67388 0.73 0.980324
Target:  5'- aAGUGuGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 1447 0.73 0.980324
Target:  5'- aAGUGaGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 104201 0.74 0.977881
Target:  5'- --uUGuuUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 20321 0.74 0.977881
Target:  5'- --uUGuaUAUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.