miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 169167 0.68 0.999621
Target:  5'- -------gAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccaUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 113819 0.68 0.999621
Target:  5'- --aUGuaUAUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 67026 0.68 0.999621
Target:  5'- cGAaUGaGUAUAUAGCUUAGGaGUUAAa -3'
miRNA:   3'- -CUcACcCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 148778 0.68 0.99952
Target:  5'- cGGGUauGUAUAUAGCUUAaGUGUUAAg -3'
miRNA:   3'- -CUCAccCAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 108937 0.69 0.999398
Target:  5'- cGAGUGaGUAUAUaAGCUUAaGUGUUAGc -3'
miRNA:   3'- -CUCACcCAUAUA-UCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 114281 0.69 0.999249
Target:  5'- uAGUGagcaaGUAUGUAGUgUAGGUGUUAAa -3'
miRNA:   3'- cUCACc----CAUAUAUCGaAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 23315 0.69 0.999069
Target:  5'- uGAGUGaaUAUGUAGCUUAGGUa---- -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCAcaauu -5'
28284 5' -45.8 NC_005902.1 + 116656 0.69 0.998854
Target:  5'- aAGUGaGUAuaauaagcaUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- cUCACcCAU---------AUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 28964 0.69 0.998854
Target:  5'- ------cUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 93875 0.7 0.998598
Target:  5'- uGAGUaaGUAUAUAGCUUAGuUGUUAAa -3'
miRNA:   3'- -CUCAccCAUAUAUCGAAUCcACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 157888 0.7 0.997521
Target:  5'- ------uUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 145067 0.7 0.997521
Target:  5'- -uGUGaGuGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- cuCAC-C-CAUAUAUCGAAUCCAcAAUU- -5'
28284 5' -45.8 NC_005902.1 + 88866 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 13226 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 135831 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 5422 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 125576 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 170619 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 28192 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 15341 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.