Results 1 - 20 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 16581 | 0.66 | 0.999988 |
Target: 5'- uGGUGGGUgucgcaaacaaAUAUacAGCUUAaGUGUUAAa -3' miRNA: 3'- cUCACCCA-----------UAUA--UCGAAUcCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 137783 | 0.66 | 0.999988 |
Target: 5'- -uGUGuaUAUAUAGCUUAaGUGUUAAa -3' miRNA: 3'- cuCACccAUAUAUCGAAUcCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 136084 | 0.66 | 0.999988 |
Target: 5'- -uGUuuGUAUAUAGCUUAGGaGUUAAa -3' miRNA: 3'- cuCAccCAUAUAUCGAAUCCaCAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 184631 | 0.66 | 0.999988 |
Target: 5'- -----cGUAUAUAGCUUAGGgGUUAAa -3' miRNA: 3'- cucaccCAUAUAUCGAAUCCaCAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 36839 | 0.66 | 0.999983 |
Target: 5'- --aUGaGUAUAUAGCUUAGGUaUUAAa -3' miRNA: 3'- cucACcCAUAUAUCGAAUCCAcAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 100419 | 0.66 | 0.999983 |
Target: 5'- cGAGUcaGUAUAUAGCUUaAGG-GUUAAa -3' miRNA: 3'- -CUCAccCAUAUAUCGAA-UCCaCAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 1289 | 0.66 | 0.999977 |
Target: 5'- uGAGUa--UAUAUAGCUcAGGUGUUAGg -3' miRNA: 3'- -CUCAcccAUAUAUCGAaUCCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 90273 | 0.66 | 0.999968 |
Target: 5'- aAGUGaaUAUAUAGCUUAaGUGUUAAa -3' miRNA: 3'- cUCACccAUAUAUCGAAUcCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 112185 | 0.67 | 0.999956 |
Target: 5'- uGAGUGaGUAUAU-GCUUAuGUGUUAAa -3' miRNA: 3'- -CUCACcCAUAUAuCGAAUcCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 122802 | 0.67 | 0.999941 |
Target: 5'- ---cGaGUAUAUAGCUUAGGgGUUAAa -3' miRNA: 3'- cucaCcCAUAUAUCGAAUCCaCAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 151218 | 0.67 | 0.999941 |
Target: 5'- uAGUGaaugaGUAUAUAaCUUAGGUGUUAAa -3' miRNA: 3'- cUCACc----CAUAUAUcGAAUCCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 136927 | 0.67 | 0.999895 |
Target: 5'- cGAGUGaGUAUAUAGUgUAGGUaUUAAa -3' miRNA: 3'- -CUCACcCAUAUAUCGaAUCCAcAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 110894 | 0.67 | 0.999862 |
Target: 5'- -uGUGGGUAUAUAGCUUAa------- -3' miRNA: 3'- cuCACCCAUAUAUCGAAUccacaauu -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 97749 | 0.68 | 0.999821 |
Target: 5'- -------cAUAUAGCUUAGGUGUUAAu -3' miRNA: 3'- cucacccaUAUAUCGAAUCCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 182661 | 0.68 | 0.999821 |
Target: 5'- --uUGuaUGUAUAGCUUAGGUGUa-- -3' miRNA: 3'- cucACccAUAUAUCGAAUCCACAauu -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 100020 | 0.68 | 0.999821 |
Target: 5'- -------aAUAUAGCUUAGGUGUUAAu -3' miRNA: 3'- cucacccaUAUAUCGAAUCCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 85940 | 0.68 | 0.999821 |
Target: 5'- -------aAUAUAGCUUAGGUGUUAAu -3' miRNA: 3'- cucacccaUAUAUCGAAUCCACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 44102 | 0.68 | 0.999768 |
Target: 5'- aAGUGaGUAUAUAGUUUAGcUGUUAAa -3' miRNA: 3'- cUCACcCAUAUAUCGAAUCcACAAUU- -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 42400 | 0.68 | 0.999702 |
Target: 5'- -----aGUAUAUAGCUUAGGUGUc-- -3' miRNA: 3'- cucaccCAUAUAUCGAAUCCACAauu -5' |
|||||||
28284 | 5' | -45.8 | NC_005902.1 | + | 169167 | 0.68 | 0.999621 |
Target: 5'- -------gAUAUAGCUUAGGUGUUAAa -3' miRNA: 3'- cucacccaUAUAUCGAAUCCACAAUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home