miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 80771 1.07 0.035488
Target:  5'- uGAGUGGGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACCCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 162627 0.75 0.945138
Target:  5'- -uGUuuGUAUAUAGCUUGGGUGUUAAc -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 52367 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 136084 0.66 0.999988
Target:  5'- -uGUuuGUAUAUAGCUUAGGaGUUAAa -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 48604 0.8 0.804834
Target:  5'- uGAGUGaaUAUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 42264 0.79 0.832893
Target:  5'- --aUGaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 67742 0.78 0.859011
Target:  5'- cGAGUGaGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- -CUCACcCAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 50490 0.78 0.867244
Target:  5'- uGAGUGuGUGUAucUAGUUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACcCAUAU--AUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 29484 0.77 0.904532
Target:  5'- uAGUGaGUAaauaUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACcCAU----AUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 20153 0.76 0.934945
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 39303 0.77 0.911177
Target:  5'- -uGUuuGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 25156 0.77 0.89761
Target:  5'- aAGUGaGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 114433 0.87 0.422988
Target:  5'- aAGUGaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 167183 0.77 0.911177
Target:  5'- ---aGcGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaCcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 74806 0.87 0.442442
Target:  5'- uGAGUGuaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 142021 0.78 0.882953
Target:  5'- --aUGcGuGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucAC-C-CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 28803 0.77 0.917542
Target:  5'- -uGUGcucuuuuGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCACc------CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 3478 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 54373 0.8 0.795097
Target:  5'- -uGUGuaUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 162431 0.79 0.841827
Target:  5'- --uUGuGUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACcCAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.