miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 1289 0.66 0.999977
Target:  5'- uGAGUa--UAUAUAGCUcAGGUGUUAGg -3'
miRNA:   3'- -CUCAcccAUAUAUCGAaUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 1447 0.73 0.980324
Target:  5'- aAGUGaGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 3109 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 3478 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 5210 0.81 0.722714
Target:  5'- uGAGUGaGUAUAUcGCUUAGGUGUUAGg -3'
miRNA:   3'- -CUCACcCAUAUAuCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 5422 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 11439 0.76 0.934945
Target:  5'- -uGUGcucauucGUAUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- cuCACc------CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 13226 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 15341 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 15503 0.82 0.701027
Target:  5'- uGAGUGuaUAUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 16581 0.66 0.999988
Target:  5'- uGGUGGGUgucgcaaacaaAUAUacAGCUUAaGUGUUAAa -3'
miRNA:   3'- cUCACCCA-----------UAUA--UCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 16919 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 18886 0.76 0.940182
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 20153 0.76 0.934945
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 20321 0.74 0.977881
Target:  5'- --uUGuaUAUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 23315 0.69 0.999069
Target:  5'- uGAGUGaaUAUGUAGCUUAGGUa---- -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCAcaauu -5'
28284 5' -45.8 NC_005902.1 + 23448 0.72 0.992209
Target:  5'- aAGUGaGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCAcaauu -5'
28284 5' -45.8 NC_005902.1 + 23647 0.87 0.422988
Target:  5'- aAGUGaGUAUGUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 25156 0.77 0.89761
Target:  5'- aAGUGaGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 28192 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.