miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 184631 0.66 0.999988
Target:  5'- -----cGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 182961 0.83 0.656922
Target:  5'- aAGUGuaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 182661 0.68 0.999821
Target:  5'- --uUGuaUGUAUAGCUUAGGUGUa-- -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAauu -5'
28284 5' -45.8 NC_005902.1 + 179785 0.72 0.993289
Target:  5'- aAGUGuaUAUAUGGCUUcGGUGUUAAc -3'
miRNA:   3'- cUCACccAUAUAUCGAAuCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 172855 0.94 0.193689
Target:  5'- --aUGGGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACCCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 170619 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 169572 0.72 0.988129
Target:  5'- --aUGcGaGUGUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- cucAC-C-CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 169167 0.68 0.999621
Target:  5'- -------gAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccaUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 167183 0.77 0.911177
Target:  5'- ---aGcGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaCcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 163421 0.75 0.949818
Target:  5'- uGAGUaaaUAUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- -CUCAcccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 162780 0.78 0.882953
Target:  5'- -uGUGaaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 162627 0.75 0.945138
Target:  5'- -uGUuuGUAUAUAGCUUGGGUGUUAAc -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 162431 0.79 0.841827
Target:  5'- --uUGuGUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 157888 0.7 0.997521
Target:  5'- ------uUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 157061 0.77 0.911177
Target:  5'- -cGUuuGUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 156829 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 153060 0.86 0.49317
Target:  5'- uGAGUGaGUAUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- -CUCACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 151218 0.67 0.999941
Target:  5'- uAGUGaaugaGUAUAUAaCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACc----CAUAUAUcGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 148778 0.68 0.99952
Target:  5'- cGGGUauGUAUAUAGCUUAaGUGUUAAg -3'
miRNA:   3'- -CUCAccCAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 147628 0.73 0.986453
Target:  5'- aAGUGaGUGUAUAGCUUAGaUGUUAAu -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCcACAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.