miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 80771 1.07 0.035488
Target:  5'- uGAGUGGGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACCCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 172855 0.94 0.193689
Target:  5'- --aUGGGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACCCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 138799 0.92 0.25939
Target:  5'- gGAGUGuGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 23647 0.87 0.422988
Target:  5'- aAGUGaGUAUGUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 144054 0.87 0.422988
Target:  5'- aAGUGaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 114433 0.87 0.422988
Target:  5'- aAGUGaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 74806 0.87 0.442442
Target:  5'- uGAGUGuaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 153060 0.86 0.49317
Target:  5'- uGAGUGaGUAUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- -CUCACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 57256 0.84 0.601335
Target:  5'- uGAGUGuaaacaaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACc------CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 182961 0.83 0.656922
Target:  5'- aAGUGuaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 15503 0.82 0.701027
Target:  5'- uGAGUGuaUAUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 5210 0.81 0.722714
Target:  5'- uGAGUGaGUAUAUcGCUUAGGUGUUAGg -3'
miRNA:   3'- -CUCACcCAUAUAuCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 54373 0.8 0.795097
Target:  5'- -uGUGuaUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 131164 0.8 0.804834
Target:  5'- -uGUGuugaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCACc---CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 48604 0.8 0.804834
Target:  5'- uGAGUGaaUAUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 140957 0.8 0.804834
Target:  5'- aAGUaaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCAccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 86479 0.79 0.814386
Target:  5'- cGAaUGaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -CUcACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 135925 0.79 0.832893
Target:  5'- cAGUaaGUAUGUAGCUUAGGUGUUAGg -3'
miRNA:   3'- cUCAccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 42264 0.79 0.832893
Target:  5'- --aUGaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 162431 0.79 0.841827
Target:  5'- --uUGuGUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACcCAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.