miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 28803 0.77 0.917542
Target:  5'- -uGUGcucuuuuGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCACc------CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 28964 0.69 0.998854
Target:  5'- ------cUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 29255 0.75 0.954224
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAGg -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 29484 0.77 0.904532
Target:  5'- uAGUGaGUAaauaUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACcCAU----AUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 29607 0.77 0.911177
Target:  5'- -uGUuuGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 31454 0.74 0.969213
Target:  5'- aAGUGaGUAUAUAGCUUAGGUaaaggGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCA-----CAAUU- -5'
28284 5' -45.8 NC_005902.1 + 34739 0.74 0.973517
Target:  5'- aGAGUGuagcaacuaaauaUAUAUAGCUUAGGUGUUAAg -3'
miRNA:   3'- -CUCACcc-----------AUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 36839 0.66 0.999983
Target:  5'- --aUGaGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- cucACcCAUAUAUCGAAUCCAcAAUU- -5'
28284 5' -45.8 NC_005902.1 + 38452 0.68 0.999621
Target:  5'- ------aUAUAUAGCUUAGGUGUUAc -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUu -5'
28284 5' -45.8 NC_005902.1 + 39303 0.77 0.911177
Target:  5'- -uGUuuGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 39611 0.73 0.986453
Target:  5'- uAGUGaau-UAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACccauAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 42264 0.79 0.832893
Target:  5'- --aUGaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACcCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 42400 0.68 0.999702
Target:  5'- -----aGUAUAUAGCUUAGGUGUc-- -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAauu -5'
28284 5' -45.8 NC_005902.1 + 43873 0.77 0.911177
Target:  5'- aAGUGuagcaaauaaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACc---------CAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 44102 0.68 0.999768
Target:  5'- aAGUGaGUAUAUAGUUUAGcUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCcACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 45117 0.75 0.958361
Target:  5'- -uGUucGUAUAUAGCUUAGGUGUUAu -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCACAAUu -5'
28284 5' -45.8 NC_005902.1 + 48264 0.74 0.972335
Target:  5'- --uUGuaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 48604 0.8 0.804834
Target:  5'- uGAGUGaaUAUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- -CUCACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 49990 0.76 0.923625
Target:  5'- aAGUGaGUAUAUAGCUUAGGaGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 50229 0.7 0.997035
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.