miRNA display CGI


Results 61 - 80 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 18180 0.76 0.998795
Target:  5'- uAAUGCAugCUgUAGGGUUUAAGGGu -3'
miRNA:   3'- cUUAUGUugGGaAUCCUAAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 63186 0.76 0.998795
Target:  5'- aAAUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 82154 0.77 0.997819
Target:  5'- aGGUAUAAaCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 36347 0.77 0.996854
Target:  5'- uGAcgAUAAcCCCUUAGGAgUUAAGGGGu -3'
miRNA:   3'- -CUuaUGUU-GGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 67402 0.77 0.996854
Target:  5'- -uAUugAugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuUAugUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 149727 0.77 0.996854
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAGa- -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 136621 0.78 0.995561
Target:  5'- -uAUAUAAgCCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 78668 0.79 0.990382
Target:  5'- aAGUAUaAGCCC-UAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUG-UUGGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 163656 0.8 0.983522
Target:  5'- -uAUAUAG-CCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 29139 0.82 0.955473
Target:  5'- aAGUAUAAgCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 52478 0.85 0.898401
Target:  5'- cGAAUAUaAGCCC-UAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUG-UUGGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 163488 0.85 0.898401
Target:  5'- aAGUAUAG-CCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 82205 0.86 0.850557
Target:  5'- ---aAUAACaCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 139785 0.86 0.841687
Target:  5'- -uAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50392 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 184559 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 143693 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 90585 0.87 0.813716
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 131155 0.87 0.813716
Target:  5'- uGAGUAUAAgCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 168569 0.87 0.813716
Target:  5'- -uAUAUAAgCCUUAGGGUUUAAAGGAu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.