miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 96083 0.71 0.999998
Target:  5'- uGAUA-AugCCUUAGGAgUUAGAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 149292 0.71 0.999998
Target:  5'- cGAUG-AugCCUUAGGAUUUaAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUAAA-UUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50193 0.71 0.999998
Target:  5'- uGAUG-AugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 55198 0.71 0.999997
Target:  5'- -----gAugCCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 148166 0.71 0.999996
Target:  5'- aAGUGCAGCgaaugcUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUGgga---AUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 143511 0.72 0.999983
Target:  5'- uGAGUguaGCAAaCgUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUA---UGUUgGgAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 69207 0.73 0.999977
Target:  5'- aGGUAUAAgCCUUAGGAUUUAAAa-- -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUccu -5'
28285 5' -41.3 NC_005902.1 + 33292 0.73 0.999968
Target:  5'- -uAUAUAAgCCUUAGGAUUUAAAaGAu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUcCU- -5'
28285 5' -41.3 NC_005902.1 + 158176 0.73 0.999956
Target:  5'- aAGUAUAAgCCUUAaGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUcCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 180997 0.73 0.999956
Target:  5'- ---gACAACgCUUUAGGAgUUAAAGGGc -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 110378 0.74 0.99992
Target:  5'- ---gACAAUgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 25278 0.74 0.99992
Target:  5'- ---aACAACgCUUUAGGAgUUAAAGGGg -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 48208 0.74 0.99992
Target:  5'- ---gAUGACgCCUUAGGAgcUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaaAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 27854 0.74 0.999816
Target:  5'- uGAAcACAGCaaacaUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUaUGUUGgg---AAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 180961 0.75 0.999761
Target:  5'- ---gAUAACaCCUUAGGAaUUAAGGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 95341 0.75 0.999761
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAuGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUU-CCu -5'
28285 5' -41.3 NC_005902.1 + 10348 0.75 0.999692
Target:  5'- -cGUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 99702 0.75 0.999501
Target:  5'- ---gAUGACgCCUUAGGAaUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 16011 0.76 0.999371
Target:  5'- ---aACAAUgCCUUAGGAgUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 18180 0.76 0.998795
Target:  5'- uAAUGCAugCUgUAGGGUUUAAGGGu -3'
miRNA:   3'- cUUAUGUugGGaAUCCUAAAUUUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.