miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 78939 0.69 1
Target:  5'- ----uCAACgCUUUAGGAgUUAAGGGAu -3'
miRNA:   3'- cuuauGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 81137 1.12 0.07002
Target:  5'- aGAAUACAACCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- -CUUAUGUUGGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 81307 0.68 1
Target:  5'- -uGUAUAAUCgccAGGGUUUAAAGGAu -3'
miRNA:   3'- cuUAUGUUGGgaaUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 82154 0.77 0.997819
Target:  5'- aGGUAUAAaCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 82205 0.86 0.850557
Target:  5'- ---aAUAACaCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 87215 0.67 1
Target:  5'- ---aAUGAUaCCUUAGGGaUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 88990 0.67 1
Target:  5'- aAGUAUAugCUUUAGGAgUUAAAGa- -3'
miRNA:   3'- cUUAUGUugGGAAUCCUaAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 90585 0.87 0.813716
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 91274 0.66 1
Target:  5'- -----aAugCCUUAGGAgUUAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 95341 0.75 0.999761
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAuGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUU-CCu -5'
28285 5' -41.3 NC_005902.1 + 96079 0.71 0.999999
Target:  5'- uGAUA-AugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 96083 0.71 0.999998
Target:  5'- uGAUA-AugCCUUAGGAgUUAGAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 99702 0.75 0.999501
Target:  5'- ---gAUGACgCCUUAGGAaUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 100487 0.91 0.641766
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 100592 0.68 1
Target:  5'- -cAUAUAAgCCUUAGGAUUUAacccuuuacucuuAAGGc -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAU-------------UUCCu -5'
28285 5' -41.3 NC_005902.1 + 106099 0.67 1
Target:  5'- cGAUGCuuugcauuaaugAugCCUUAGGAguuaaagagUUAAAGGAu -3'
miRNA:   3'- cUUAUG------------UugGGAAUCCUa--------AAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 110018 0.69 1
Target:  5'- ---gAUAAUaCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 110378 0.74 0.99992
Target:  5'- ---gACAAUgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 113038 0.7 1
Target:  5'- ---gGCAGCCCaggaauaacuGGAUUUAAAGGu -3'
miRNA:   3'- cuuaUGUUGGGaau-------CCUAAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 122796 0.69 1
Target:  5'- ---aGCGACCgaguauauagCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUGG----------GAAUCCuaAAUUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.