miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 51401 0.66 1
Target:  5'- ---aACAACacaUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUGgg-AAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 52478 0.85 0.898401
Target:  5'- cGAAUAUaAGCCC-UAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUG-UUGGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 52651 0.71 0.999999
Target:  5'- -uAUAUAAgUCcUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 55198 0.71 0.999997
Target:  5'- -----gAugCCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 61637 0.66 1
Target:  5'- uGAAUAUAGCaaauaUUAGGAUUUAAAaGAu -3'
miRNA:   3'- -CUUAUGUUGgg---AAUCCUAAAUUUcCU- -5'
28285 5' -41.3 NC_005902.1 + 63186 0.76 0.998795
Target:  5'- aAAUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 65668 0.89 0.720178
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGGg -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 67030 0.67 1
Target:  5'- uGAGUAUAuagCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- -CUUAUGUuggGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 67087 0.68 1
Target:  5'- ---aACAACaCCUUAGGA-UUAAAGa- -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 67402 0.77 0.996854
Target:  5'- -uAUugAugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuUAugUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 68203 0.68 1
Target:  5'- ----uUAACCCUguauugaugauacuuUAGGAaUUAAAGGAu -3'
miRNA:   3'- cuuauGUUGGGA---------------AUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 69207 0.73 0.999977
Target:  5'- aGGUAUAAgCCUUAGGAUUUAAAa-- -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUccu -5'
28285 5' -41.3 NC_005902.1 + 69266 0.7 1
Target:  5'- -uAUAUAAgCCUUAGaAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCcUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 69330 0.69 1
Target:  5'- uGAAUAUAugCCUUAGGAaUUAAcccuuuaacaccuAGGu -3'
miRNA:   3'- -CUUAUGUugGGAAUCCUaAAUU-------------UCCu -5'
28285 5' -41.3 NC_005902.1 + 71392 0.69 1
Target:  5'- cAGUACca-CCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGuugGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 72027 0.66 1
Target:  5'- aGAAUugAACCUUUcAGGuUUUAAAGa- -3'
miRNA:   3'- -CUUAugUUGGGAA-UCCuAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 74871 0.67 1
Target:  5'- ---aACAACgCaUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUGgG-AAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 75812 0.69 1
Target:  5'- ---aACAACCCcaaauuguggUUGGGAUgauaaUGGAGGAa -3'
miRNA:   3'- cuuaUGUUGGG----------AAUCCUAa----AUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 76145 0.68 1
Target:  5'- -uGUAUAAgCUUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 78668 0.79 0.990382
Target:  5'- aAGUAUaAGCCC-UAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUG-UUGGGaAUCCUAAAUUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.