Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 48208 | 0.74 | 0.99992 |
Target: 5'- ---gAUGACgCCUUAGGAgcUAAAGGAu -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUaaAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 10348 | 0.75 | 0.999692 |
Target: 5'- -cGUAUAAgCCUUAGGAUUUaAAAGGu -3' miRNA: 3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 163488 | 0.85 | 0.898401 |
Target: 5'- aAGUAUAG-CCUUAGGAUUUAAAGGAu -3' miRNA: 3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 65668 | 0.89 | 0.720178 |
Target: 5'- aAGUAUAAgCCUUAGGAUUUAAAGGGg -3' miRNA: 3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 122796 | 0.69 | 1 |
Target: 5'- ---aGCGACCgaguauauagCUUAGGggUUAAAGGGu -3' miRNA: 3'- cuuaUGUUGG----------GAAUCCuaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 122873 | 0.71 | 0.999998 |
Target: 5'- uGAUG-AugCCUUAGGAaUUAAAGGGu -3' miRNA: 3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 63186 | 0.76 | 0.998795 |
Target: 5'- aAAUAUAAgCCUUAGGAUUUaAAAGGu -3' miRNA: 3'- cUUAUGUUgGGAAUCCUAAA-UUUCCu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 34672 | 0.89 | 0.720178 |
Target: 5'- uGAGUAUAAgCUUUAGGAUUUAAAGGAu -3' miRNA: 3'- -CUUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 148166 | 0.71 | 0.999996 |
Target: 5'- aAGUGCAGCgaaugcUAGGAUUUAAAGGGu -3' miRNA: 3'- cUUAUGUUGgga---AUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 43830 | 0.92 | 0.596494 |
Target: 5'- -cGUGCAAgCCUUAGGAUUUAAAGGGu -3' miRNA: 3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 99702 | 0.75 | 0.999501 |
Target: 5'- ---gAUGACgCCUUAGGAaUUAAAGGAu -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 158176 | 0.73 | 0.999956 |
Target: 5'- aAGUAUAAgCCUUAaGAUUUAAAGGGu -3' miRNA: 3'- cUUAUGUUgGGAAUcCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 82154 | 0.77 | 0.997819 |
Target: 5'- aGGUAUAAaCUUUAGGAUUUAAAGGGu -3' miRNA: 3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 78668 | 0.79 | 0.990382 |
Target: 5'- aAGUAUaAGCCC-UAGGAUUUAAAGGGu -3' miRNA: 3'- cUUAUG-UUGGGaAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 184559 | 0.87 | 0.832583 |
Target: 5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3' miRNA: 3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 168401 | 0.87 | 0.803974 |
Target: 5'- aAGUAUAAgCCUUAGGGUUUAAAGGGu -3' miRNA: 3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 67087 | 0.68 | 1 |
Target: 5'- ---aACAACaCCUUAGGA-UUAAAGa- -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUaAAUUUCcu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 110018 | 0.69 | 1 |
Target: 5'- ---gAUAAUaCCUUAGGAgUUAAAGGGu -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 137971 | 0.71 | 0.999999 |
Target: 5'- -----gAugCCUUAGGAaUUAAAGGGu -3' miRNA: 3'- cuuaugUugGGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 149292 | 0.71 | 0.999998 |
Target: 5'- cGAUG-AugCCUUAGGAUUUaAAAGGGu -3' miRNA: 3'- cUUAUgUugGGAAUCCUAAA-UUUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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