miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 78668 0.79 0.990382
Target:  5'- aAGUAUaAGCCC-UAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUG-UUGGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 136621 0.78 0.995561
Target:  5'- -uAUAUAAgCCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 67402 0.77 0.996854
Target:  5'- -uAUugAugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuUAugUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 36347 0.77 0.996854
Target:  5'- uGAcgAUAAcCCCUUAGGAgUUAAGGGGu -3'
miRNA:   3'- -CUuaUGUU-GGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 149727 0.77 0.996854
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAGa- -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 82154 0.77 0.997819
Target:  5'- aGGUAUAAaCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 18180 0.76 0.998795
Target:  5'- uAAUGCAugCUgUAGGGUUUAAGGGu -3'
miRNA:   3'- cUUAUGUugGGaAUCCUAAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 33125 0.76 0.998795
Target:  5'- aAGUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 63186 0.76 0.998795
Target:  5'- aAAUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 16011 0.76 0.999371
Target:  5'- ---aACAAUgCCUUAGGAgUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 99702 0.75 0.999501
Target:  5'- ---gAUGACgCCUUAGGAaUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 10348 0.75 0.999692
Target:  5'- -cGUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 180961 0.75 0.999761
Target:  5'- ---gAUAACaCCUUAGGAaUUAAGGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 95341 0.75 0.999761
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAuGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUU-CCu -5'
28285 5' -41.3 NC_005902.1 + 27854 0.74 0.999816
Target:  5'- uGAAcACAGCaaacaUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUaUGUUGgg---AAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 110378 0.74 0.99992
Target:  5'- ---gACAAUgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 48208 0.74 0.99992
Target:  5'- ---gAUGACgCCUUAGGAgcUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaaAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 25278 0.74 0.99992
Target:  5'- ---aACAACgCUUUAGGAgUUAAAGGGg -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 180997 0.73 0.999956
Target:  5'- ---gACAACgCUUUAGGAgUUAAAGGGc -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 158176 0.73 0.999956
Target:  5'- aAGUAUAAgCCUUAaGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUcCUAAAUUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.