miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 35079 0.68 1
Target:  5'- -----aAAgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaugUUgGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 147214 0.68 1
Target:  5'- ---aAC-ACCUUUGGGAUUUuguaauuGAGGAa -3'
miRNA:   3'- cuuaUGuUGGGAAUCCUAAAu------UUCCU- -5'
28285 5' -41.3 NC_005902.1 + 76145 0.68 1
Target:  5'- -uGUAUAAgCUUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 110018 0.69 1
Target:  5'- ---gAUAAUaCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 122796 0.69 1
Target:  5'- ---aGCGACCgaguauauagCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUGG----------GAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 71392 0.69 1
Target:  5'- cAGUACca-CCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGuugGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 36203 0.69 1
Target:  5'- uGAGUAUAAgCUUUAGG---UAAAGGAu -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCuaaAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 161983 0.69 1
Target:  5'- ---aAUGACaCCUUAGGugUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 78939 0.69 1
Target:  5'- ----uCAACgCUUUAGGAgUUAAGGGAu -3'
miRNA:   3'- cuuauGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 69330 0.69 1
Target:  5'- uGAAUAUAugCCUUAGGAaUUAAcccuuuaacaccuAGGu -3'
miRNA:   3'- -CUUAUGUugGGAAUCCUaAAUU-------------UCCu -5'
28285 5' -41.3 NC_005902.1 + 75812 0.69 1
Target:  5'- ---aACAACCCcaaauuguggUUGGGAUgauaaUGGAGGAa -3'
miRNA:   3'- cuuaUGUUGGG----------AAUCCUAa----AUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 113038 0.7 1
Target:  5'- ---gGCAGCCCaggaauaacuGGAUUUAAAGGu -3'
miRNA:   3'- cuuaUGUUGGGaau-------CCUAAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 69266 0.7 1
Target:  5'- -uAUAUAAgCCUUAGaAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCcUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 26412 0.7 1
Target:  5'- -----gAugCCUUAGGAgUUAAGGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 96079 0.71 0.999999
Target:  5'- uGAUA-AugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 149292 0.71 0.999998
Target:  5'- cGAUG-AugCCUUAGGAUUUaAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUAAA-UUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 52651 0.71 0.999999
Target:  5'- -uAUAUAAgUCcUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 17010 0.71 0.999999
Target:  5'- -----gAugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 96083 0.71 0.999998
Target:  5'- uGAUA-AugCCUUAGGAgUUAGAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50193 0.71 0.999998
Target:  5'- uGAUG-AugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.