miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 71392 0.69 1
Target:  5'- cAGUACca-CCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGuugGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 69266 0.7 1
Target:  5'- -uAUAUAAgCCUUAGaAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCcUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 51401 0.66 1
Target:  5'- ---aACAACacaUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUGgg-AAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 106099 0.67 1
Target:  5'- cGAUGCuuugcauuaaugAugCCUUAGGAguuaaagagUUAAAGGAu -3'
miRNA:   3'- cUUAUG------------UugGGAAUCCUa--------AAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 184727 0.91 0.641766
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 110378 0.74 0.99992
Target:  5'- ---gACAAUgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50578 0.66 1
Target:  5'- uGAGUGaa--UgUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUguugGgAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 69207 0.73 0.999977
Target:  5'- aGGUAUAAgCCUUAGGAUUUAAAa-- -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUccu -5'
28285 5' -41.3 NC_005902.1 + 55198 0.71 0.999997
Target:  5'- -----gAugCCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 139773 0.66 1
Target:  5'- -uAUAUAAgCCUUAGGGUUUAAc--- -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUuccu -5'
28285 5' -41.3 NC_005902.1 + 87215 0.67 1
Target:  5'- ---aAUGAUaCCUUAGGGaUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 25278 0.74 0.99992
Target:  5'- ---aACAACgCUUUAGGAgUUAAAGGGg -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50193 0.71 0.999998
Target:  5'- uGAUG-AugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 96083 0.71 0.999998
Target:  5'- uGAUA-AugCCUUAGGAgUUAGAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 52651 0.71 0.999999
Target:  5'- -uAUAUAAgUCcUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 68203 0.68 1
Target:  5'- ----uUAACCCUguauugaugauacuuUAGGAaUUAAAGGAu -3'
miRNA:   3'- cuuauGUUGGGA---------------AUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 81307 0.68 1
Target:  5'- -uGUAUAAUCgccAGGGUUUAAAGGAu -3'
miRNA:   3'- cuUAUGUUGGgaaUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 35079 0.68 1
Target:  5'- -----aAAgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaugUUgGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 147214 0.68 1
Target:  5'- ---aAC-ACCUUUGGGAUUUuguaauuGAGGAa -3'
miRNA:   3'- cuuaUGuUGGGAAUCCUAAAu------UUCCU- -5'
28285 5' -41.3 NC_005902.1 + 17010 0.71 0.999999
Target:  5'- -----gAugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.