miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 139785 0.86 0.841687
Target:  5'- -uAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 139773 0.66 1
Target:  5'- -uAUAUAAgCCUUAGGGUUUAAc--- -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUuccu -5'
28285 5' -41.3 NC_005902.1 + 137971 0.71 0.999999
Target:  5'- -----gAugCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 136621 0.78 0.995561
Target:  5'- -uAUAUAAgCCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 136258 0.67 1
Target:  5'- uGAGUAUAuagCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- -CUUAUGUuggGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 131155 0.87 0.813716
Target:  5'- uGAGUAUAAgCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 130915 0.71 0.999998
Target:  5'- --uUAUAGCU--UAGGAUUUAAAGGGu -3'
miRNA:   3'- cuuAUGUUGGgaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 122873 0.71 0.999998
Target:  5'- uGAUG-AugCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 122796 0.69 1
Target:  5'- ---aGCGACCgaguauauagCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUGG----------GAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 113038 0.7 1
Target:  5'- ---gGCAGCCCaggaauaacuGGAUUUAAAGGu -3'
miRNA:   3'- cuuaUGUUGGGaau-------CCUAAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 110378 0.74 0.99992
Target:  5'- ---gACAAUgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 110018 0.69 1
Target:  5'- ---gAUAAUaCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 106099 0.67 1
Target:  5'- cGAUGCuuugcauuaaugAugCCUUAGGAguuaaagagUUAAAGGAu -3'
miRNA:   3'- cUUAUG------------UugGGAAUCCUa--------AAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 100592 0.68 1
Target:  5'- -cAUAUAAgCCUUAGGAUUUAacccuuuacucuuAAGGc -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAU-------------UUCCu -5'
28285 5' -41.3 NC_005902.1 + 100487 0.91 0.641766
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 99702 0.75 0.999501
Target:  5'- ---gAUGACgCCUUAGGAaUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 96083 0.71 0.999998
Target:  5'- uGAUA-AugCCUUAGGAgUUAGAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 96079 0.71 0.999999
Target:  5'- uGAUA-AugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 95341 0.75 0.999761
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAuGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUU-CCu -5'
28285 5' -41.3 NC_005902.1 + 91274 0.66 1
Target:  5'- -----aAugCCUUAGGAgUUAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.