miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 184727 0.91 0.641766
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 184559 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 180997 0.73 0.999956
Target:  5'- ---gACAACgCUUUAGGAgUUAAAGGGc -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 180961 0.75 0.999761
Target:  5'- ---gAUAACaCCUUAGGAaUUAAGGGGu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 176149 0.67 1
Target:  5'- uGAUGaua-CCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUguugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 170338 0.67 1
Target:  5'- ---cACAcuACCCUUGGGAaauccccaUUUAuuGGAa -3'
miRNA:   3'- cuuaUGU--UGGGAAUCCU--------AAAUuuCCU- -5'
28285 5' -41.3 NC_005902.1 + 168569 0.87 0.813716
Target:  5'- -uAUAUAAgCCUUAGGGUUUAAAGGAu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 168401 0.87 0.803974
Target:  5'- aAGUAUAAgCCUUAGGGUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 163656 0.8 0.983522
Target:  5'- -uAUAUAG-CCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 163488 0.85 0.898401
Target:  5'- aAGUAUAG-CCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 161983 0.69 1
Target:  5'- ---aAUGACaCCUUAGGugUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 158176 0.73 0.999956
Target:  5'- aAGUAUAAgCCUUAaGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUcCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 149727 0.77 0.996854
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAGa- -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 149292 0.71 0.999998
Target:  5'- cGAUG-AugCCUUAGGAUUUaAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUAAA-UUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 148352 0.67 1
Target:  5'- --uUACAG-CUUUAGGAUUUAGAGa- -3'
miRNA:   3'- cuuAUGUUgGGAAUCCUAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 148166 0.71 0.999996
Target:  5'- aAGUGCAGCgaaugcUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUGgga---AUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 147214 0.68 1
Target:  5'- ---aAC-ACCUUUGGGAUUUuguaauuGAGGAa -3'
miRNA:   3'- cuuaUGuUGGGAAUCCUAAAu------UUCCU- -5'
28285 5' -41.3 NC_005902.1 + 143693 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 143511 0.72 0.999983
Target:  5'- uGAGUguaGCAAaCgUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUA---UGUUgGgAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 139954 0.91 0.641766
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.