miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 10348 0.75 0.999692
Target:  5'- -cGUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 15072 0.66 1
Target:  5'- uGAGUAUAAaUUUUAGGGUUUAAAGa- -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCUAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 16011 0.76 0.999371
Target:  5'- ---aACAAUgCCUUAGGAgUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 17010 0.71 0.999999
Target:  5'- -----gAugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 18180 0.76 0.998795
Target:  5'- uAAUGCAugCUgUAGGGUUUAAGGGu -3'
miRNA:   3'- cUUAUGUugGGaAUCCUAAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 25278 0.74 0.99992
Target:  5'- ---aACAACgCUUUAGGAgUUAAAGGGg -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 26412 0.7 1
Target:  5'- -----gAugCCUUAGGAgUUAAGGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 27854 0.74 0.999816
Target:  5'- uGAAcACAGCaaacaUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUaUGUUGgg---AAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 29139 0.82 0.955473
Target:  5'- aAGUAUAAgCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 33125 0.76 0.998795
Target:  5'- aAGUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 33292 0.73 0.999968
Target:  5'- -uAUAUAAgCCUUAGGAUUUAAAaGAu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUcCU- -5'
28285 5' -41.3 NC_005902.1 + 34672 0.89 0.720178
Target:  5'- uGAGUAUAAgCUUUAGGAUUUAAAGGAu -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 35079 0.68 1
Target:  5'- -----aAAgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaugUUgGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 36203 0.69 1
Target:  5'- uGAGUAUAAgCUUUAGG---UAAAGGAu -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCuaaAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 36347 0.77 0.996854
Target:  5'- uGAcgAUAAcCCCUUAGGAgUUAAGGGGu -3'
miRNA:   3'- -CUuaUGUU-GGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 43830 0.92 0.596494
Target:  5'- -cGUGCAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 48208 0.74 0.99992
Target:  5'- ---gAUGACgCCUUAGGAgcUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaaAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50193 0.71 0.999998
Target:  5'- uGAUG-AugCCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUgUugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50392 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50578 0.66 1
Target:  5'- uGAGUGaa--UgUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUguugGgAAUCCUAAAUUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.