miRNA display CGI


Results 41 - 60 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 4814 0.68 1
Target:  5'- aAGUAUAUAaCUUAGGagUUAAAGGc -3'
miRNA:   3'- cUUAUAUAUcGAAUCCagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 90584 0.68 1
Target:  5'- --uUGUAUaAGcCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuAUAUA-UC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 97749 0.68 1
Target:  5'- ---cAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 100020 0.68 1
Target:  5'- ---aAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 69098 0.68 1
Target:  5'- --uUAUAUAaCcUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUcGaAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 116815 0.68 1
Target:  5'- gGAGUAUA---CUUAGGUgUUAAAGGu -3'
miRNA:   3'- -CUUAUAUaucGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 165756 0.69 1
Target:  5'- aAGUAUAUGuuaaCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cUUAUAUAUc---GAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 37290 0.69 1
Target:  5'- ---cAUAUAGCUUAaGUgUUAAAGGa -3'
miRNA:   3'- cuuaUAUAUCGAAUcCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 58658 0.69 1
Target:  5'- uGAGUAUAUAGaacaagUA-GUCUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCga----AUcCAGAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 68110 0.69 1
Target:  5'- ---cAUAUAaCUUAGGUggUAGAGGGu -3'
miRNA:   3'- cuuaUAUAUcGAAUCCAgaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 139108 0.69 1
Target:  5'- ---cAUAUAGCUUAGGUaUUAAcAGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUU-UCCc -5'
28286 5' -40.1 NC_005902.1 + 52478 0.69 1
Target:  5'- cGAAUAUA-AGCccUAGGaUUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUaUCGa-AUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 40997 0.69 1
Target:  5'- ---cAUAUAGCUUAGGUgcUAAAGa- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgaAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 163489 0.69 1
Target:  5'- ---aGUAUAGcCUUAGGaUUUAAAGGa -3'
miRNA:   3'- cuuaUAUAUC-GAAUCCaGAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 154957 0.69 1
Target:  5'- -----cAUAGCUUGGGUgUUAAAaGGu -3'
miRNA:   3'- cuuauaUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 127508 0.69 1
Target:  5'- aGAAUGUG-AGCaaucAGGaagUCUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUaUCGaa--UCC---AGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 101108 0.69 1
Target:  5'- -uGUAUAUuGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAuCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 111436 0.69 1
Target:  5'- -uAUAUAUAGCUUAuauaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUccagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 157207 0.69 1
Target:  5'- aAAUAUAUAGCUUAGGUaUUAAc--- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 116672 0.69 1
Target:  5'- ---cAUAUAGUUUAGGUgUUAAAcGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUUcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.