miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 49629 0.67 1
Target:  5'- --uUAUAUaAGcCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuAUAUA-UC-GAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 18790 0.67 1
Target:  5'- cGAAUAUAUAaCUUAGGUgUUAAAa-- -3'
miRNA:   3'- -CUUAUAUAUcGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 145129 0.67 1
Target:  5'- ----uUAUAGCuUUAGGUaUUAAAGGa -3'
miRNA:   3'- cuuauAUAUCG-AAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 23290 0.68 1
Target:  5'- ---cAUAUAGCUUAaaUgUUAAAGGGa -3'
miRNA:   3'- cuuaUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 81322 0.68 1
Target:  5'- uGAGUAUAUAGCUUAaaagUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCGAAUccagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 104120 0.68 1
Target:  5'- -----cAUGGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuuauaUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 7678 0.68 1
Target:  5'- -uGUAUAUAGCUUAGGUagagUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAga--AUUUccc -5'
28286 5' -40.1 NC_005902.1 + 27922 0.68 1
Target:  5'- -uGUAUAUAGCUUAaGUaUUAAAGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 168401 0.68 1
Target:  5'- aAGUAUA-AGcCUUAGGgUUUAAAGGGu -3'
miRNA:   3'- cUUAUAUaUC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 90635 0.68 1
Target:  5'- -cAUAUAUAaUUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 69098 0.68 1
Target:  5'- --uUAUAUAaCcUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUcGaAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 85940 0.68 1
Target:  5'- ---aAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 157112 0.68 1
Target:  5'- aAGUAUA-AGCuUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cUUAUAUaUCG-AAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 116815 0.68 1
Target:  5'- gGAGUAUA---CUUAGGUgUUAAAGGu -3'
miRNA:   3'- -CUUAUAUaucGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 100020 0.68 1
Target:  5'- ---aAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 97749 0.68 1
Target:  5'- ---cAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 4814 0.68 1
Target:  5'- aAGUAUAUAaCUUAGGagUUAAAGGc -3'
miRNA:   3'- cUUAUAUAUcGAAUCCagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 136931 0.68 1
Target:  5'- uGAGUAUAUAGUgUAGGUaUUAAAGuGa -3'
miRNA:   3'- -CUUAUAUAUCGaAUCCAgAAUUUC-Cc -5'
28286 5' -40.1 NC_005902.1 + 114289 0.68 1
Target:  5'- aAGUAUGUAGUgUAGGUgUUAAAaGGu -3'
miRNA:   3'- cUUAUAUAUCGaAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 90584 0.68 1
Target:  5'- --uUGUAUaAGcCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuAUAUA-UC-GAAUCCaGAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.