Results 1 - 20 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 48607 | 0.66 | 1 |
Target: 5'- cAGUGUAUAGCUUAGaUgUUAAAaGGu -3' miRNA: 3'- cUUAUAUAUCGAAUCcAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 40946 | 0.66 | 1 |
Target: 5'- aAAUGUAUAGCUUGGGUa-------- -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgaauuuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 153752 | 0.66 | 1 |
Target: 5'- uGAUAUAUGGa--GGGUUU-AAAGGGu -3' miRNA: 3'- cUUAUAUAUCgaaUCCAGAaUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 50392 | 0.66 | 1 |
Target: 5'- -cAUAUA-AGcCUUAGGaUUUAAAGGGu -3' miRNA: 3'- cuUAUAUaUC-GAAUCCaGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 162063 | 0.66 | 1 |
Target: 5'- --uUAUAUAGUUUAGaUgUUAAAGGa -3' miRNA: 3'- cuuAUAUAUCGAAUCcAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 99599 | 0.66 | 1 |
Target: 5'- -uGUAUAUAGCUUAaGUgUUAAAGa- -3' miRNA: 3'- cuUAUAUAUCGAAUcCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 49036 | 0.66 | 1 |
Target: 5'- ---gAUAaAGCUcUAGGagUUAAGGGGu -3' miRNA: 3'- cuuaUAUaUCGA-AUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 184559 | 0.66 | 1 |
Target: 5'- -cAUAUA-AGcCUUAGGaUUUAAAGGGu -3' miRNA: 3'- cuUAUAUaUC-GAAUCCaGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 160922 | 0.66 | 1 |
Target: 5'- -uAUAUAUAGCaUAGaGU--UAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGaAUC-CAgaAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 42558 | 0.66 | 1 |
Target: 5'- -cAUAUA-AGcCUUAGGaUUUAAAGGGu -3' miRNA: 3'- cuUAUAUaUC-GAAUCCaGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 44105 | 0.66 | 1 |
Target: 5'- uGAGUAUAUAGUUUAGcUgUUAAAGa- -3' miRNA: 3'- -CUUAUAUAUCGAAUCcAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 84968 | 0.66 | 1 |
Target: 5'- -cAUAUAUAGUgUAGaUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGaAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 107830 | 0.66 | 1 |
Target: 5'- -cGUAUAUAGCUUAGaUgUUAAAGa- -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 34672 | 0.67 | 1 |
Target: 5'- uGAGUAUA-AGCuUUAGGaUUUAAAGGa -3' miRNA: 3'- -CUUAUAUaUCG-AAUCCaGAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 8442 | 0.67 | 1 |
Target: 5'- uGAGUAUAucaaauaaUAGUUUAGGUgUUAAAaGGu -3' miRNA: 3'- -CUUAUAU--------AUCGAAUCCAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 76044 | 0.67 | 1 |
Target: 5'- ---aAUAUAGCUUAGauaUUGAAGGa -3' miRNA: 3'- cuuaUAUAUCGAAUCcagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 18790 | 0.67 | 1 |
Target: 5'- cGAAUAUAUAaCUUAGGUgUUAAAa-- -3' miRNA: 3'- -CUUAUAUAUcGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 78239 | 0.67 | 1 |
Target: 5'- aAGUAUAUAGCUUAGaUgUUAAAGa- -3' miRNA: 3'- cUUAUAUAUCGAAUCcAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 145129 | 0.67 | 1 |
Target: 5'- ----uUAUAGCuUUAGGUaUUAAAGGa -3' miRNA: 3'- cuuauAUAUCG-AAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 41891 | 0.67 | 1 |
Target: 5'- uGAAUAUAUAGaUUAGGUaUUAAAGa- -3' miRNA: 3'- -CUUAUAUAUCgAAUCCAgAAUUUCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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