miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 109953 1.13 0.081113
Target:  5'- uGAAUAUAUAGCUUAGGUCUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 39307 0.9 0.779448
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 29492 0.89 0.838078
Target:  5'- aAAUAUAUAGCUUAGGUgUUaAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAA-UUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 49036 0.66 1
Target:  5'- ---gAUAaAGCUcUAGGagUUAAGGGGu -3'
miRNA:   3'- cuuaUAUaUCGA-AUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 67030 0.98 0.459455
Target:  5'- uGAGUAUAUAGCUUAGGagUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 114436 0.97 0.480312
Target:  5'- uGAGUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 28813 0.97 0.50162
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 13225 0.96 0.523333
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 122802 0.96 0.534325
Target:  5'- cGAGUAUAUAGCUUAGGggUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 136088 0.91 0.758466
Target:  5'- -uGUAUAUAGCUUAGGagUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 6345 0.93 0.647262
Target:  5'- -uAUAUAUAGCUUAGGUUUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAGAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 125575 0.96 0.534325
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 42265 1.03 0.260318
Target:  5'- uGAGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 131155 0.91 0.736929
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 80775 1.01 0.328724
Target:  5'- uGggUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CuuAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 54377 0.96 0.534325
Target:  5'- -uAUGUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 154625 0.91 0.736929
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 104865 0.89 0.828825
Target:  5'- -cAUAUAUAGCUUAGGUagguaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAg----AAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 16917 0.98 0.429101
Target:  5'- aAAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 20153 0.97 0.490912
Target:  5'- -cGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.