miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 1177 0.86 0.928718
Target:  5'- -cAUAUAUacAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUA--UCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 29492 0.89 0.838078
Target:  5'- aAAUAUAUAGCUUAGGUgUUaAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAA-UUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 125575 0.96 0.534325
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 16917 0.98 0.429101
Target:  5'- aAAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 169575 0.82 0.986926
Target:  5'- cGAGUGUAUAGUUUAGGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 162753 0.85 0.954221
Target:  5'- -cAUAUAUAGCUUAGGUaUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 39307 0.9 0.779448
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 80775 1.01 0.328724
Target:  5'- uGggUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CuuAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 29134 0.85 0.954221
Target:  5'- -uAUAUAUAGUUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 42265 1.03 0.260318
Target:  5'- uGAGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 104865 0.89 0.828825
Target:  5'- -cAUAUAUAGCUUAGGUagguaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAg----AAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 71498 0.86 0.928718
Target:  5'- --uUAUAUAGCcUAGGUgUUAAAGGGg -3'
miRNA:   3'- cuuAUAUAUCGaAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 131155 0.91 0.736929
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 122802 0.96 0.534325
Target:  5'- cGAGUAUAUAGCUUAGGggUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 28813 0.97 0.50162
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 67030 0.98 0.459455
Target:  5'- uGAGUAUAUAGCUUAGGagUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 170618 0.81 0.990094
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 5421 0.82 0.988595
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 99651 0.82 0.985076
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 78118 0.83 0.975629
Target:  5'- aAGUAUAUAGCUUAGaGUUUaUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUC-CAGA-AUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.