miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 16529 0.75 0.999955
Target:  5'- aGAUAUAUAGCUcAGGUgUUAAAGa- -3'
miRNA:   3'- cUUAUAUAUCGAaUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 16598 0.72 1
Target:  5'- aAAUAUAcAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUaUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 16917 0.98 0.429101
Target:  5'- aAAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 18790 0.67 1
Target:  5'- cGAAUAUAUAaCUUAGGUgUUAAAa-- -3'
miRNA:   3'- -CUUAUAUAUcGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 18885 1 0.381251
Target:  5'- aAGUAUAUAGCUUAGGUgUUAAAGGGa -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 19914 0.75 0.999955
Target:  5'- -uGUAUAUAGCUUAaGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 20153 0.97 0.490912
Target:  5'- -cGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 20324 0.72 0.999999
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 22594 0.77 0.999597
Target:  5'- --uUAUAUAGcCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 22654 0.7 1
Target:  5'- -cAUAUAUAGCUUAGaUgUUaAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 23290 0.68 1
Target:  5'- ---cAUAUAGCUUAaaUgUUAAAGGGa -3'
miRNA:   3'- cuuaUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 23319 0.82 0.988595
Target:  5'- uGAAUAUGUAGCUUAGGUau--AAGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgaauUUCCc -5'
28286 5' -40.1 NC_005902.1 + 23451 0.73 0.999999
Target:  5'- uGAGUAUAUAGCUUAGGUauuuaUUAAc--- -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAg----AAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 23507 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 23650 1.04 0.227589
Target:  5'- uGAGUAUGUAGCUUAGGUgUUAAAGGGa -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 25159 0.74 0.999994
Target:  5'- uGAGUAUAUAGCUUAGGggUUAAAu-- -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCagAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 26300 0.7 1
Target:  5'- -uAUAUAUAGCUUAGGUaUUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 26529 0.68 1
Target:  5'- uGAGUAUAuaaUAGCUUAaaUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAU---AUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 27813 0.85 0.944896
Target:  5'- -uGUAUAUAGCUUAGGcaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 27922 0.68 1
Target:  5'- -uGUAUAUAGCUUAaGUaUUAAAGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.