miRNA display CGI


Results 1 - 20 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 1177 0.86 0.928718
Target:  5'- -cAUAUAUacAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUA--UCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 1450 0.71 1
Target:  5'- uGAGUAUAUAGCUUAaGUgUUAAAGc- -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 3108 0.75 0.999955
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 3478 0.76 0.999891
Target:  5'- -uGUAUAUAGCUUAGGUgUUAaaaucGAGuGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAU-----UUC-CC- -5'
28286 5' -40.1 NC_005902.1 + 4814 0.68 1
Target:  5'- aAGUAUAUAaCUUAGGagUUAAAGGc -3'
miRNA:   3'- cUUAUAUAUcGAAUCCagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 5214 0.7 1
Target:  5'- uGAGUAUAUcGCUUAGGUgUU--AGGu -3'
miRNA:   3'- -CUUAUAUAuCGAAUCCAgAAuuUCCc -5'
28286 5' -40.1 NC_005902.1 + 5421 0.82 0.988595
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 5691 0.74 0.999992
Target:  5'- -uGUAUAUAGCUUAGGggUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCagAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 6228 0.87 0.903005
Target:  5'- uGAGUAUAUAGCUUAGuUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 6345 0.93 0.647262
Target:  5'- -uAUAUAUAGCUUAGGUUUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAGAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 7678 0.68 1
Target:  5'- -uGUAUAUAGCUUAGGUagagUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAga--AUUUccc -5'
28286 5' -40.1 NC_005902.1 + 8442 0.67 1
Target:  5'- uGAGUAUAucaaauaaUAGUUUAGGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAU--------AUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 11449 0.74 0.999983
Target:  5'- -cGUAUAUAGCUUAGGUgUUAAcucGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUu--CCc -5'
28286 5' -40.1 NC_005902.1 + 12863 0.74 0.999994
Target:  5'- -uGUAUAUAaCUUAGGagUUAAGGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 13225 0.96 0.523333
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 13435 0.82 0.985076
Target:  5'- aAGUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 15192 0.73 0.999999
Target:  5'- -uGUAUAUAGCUUAcaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 15340 0.82 0.988595
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 15509 0.74 0.999994
Target:  5'- -uAUAUAUAGUUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 16058 0.78 0.999193
Target:  5'- uGAAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcagaAUUUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.