miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 184895 0.97 0.50162
Target:  5'- -uGUAUAcAGCUUAGGUCUUAAAGGGu -3'
miRNA:   3'- cuUAUAUaUCGAAUCCAGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 184779 0.71 1
Target:  5'- -uAUAUAUAGCcUAGGUgUUGAAGa- -3'
miRNA:   3'- cuUAUAUAUCGaAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 184631 0.72 1
Target:  5'- -cGUAUAUAGCUUAGGggUUAaaAAGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCagAAU--UUCCc -5'
28286 5' -40.1 NC_005902.1 + 184559 0.66 1
Target:  5'- -cAUAUA-AGcCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuUAUAUaUC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 182966 0.74 0.999983
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAu-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 182605 0.75 0.999939
Target:  5'- aAAUAUAaGGCUUAGuUUUUAAAGGGu -3'
miRNA:   3'- cUUAUAUaUCGAAUCcAGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 180391 0.79 0.998481
Target:  5'- uGAGUAUAUAGCUUAauUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 179727 0.92 0.691474
Target:  5'- -uGUAUAUGGCUUAGGUCUuaaagauUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAGA-------AUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 178439 0.82 0.988595
Target:  5'- uGAGUAUAUAaUUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 175652 0.78 0.999355
Target:  5'- uGAGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 173499 0.7 1
Target:  5'- -uGUAUAUAaUUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 173216 0.74 0.999994
Target:  5'- -uAUAUAUAaCUUAGGagUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 172856 1.01 0.328724
Target:  5'- uGggUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CuuAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 170618 0.81 0.990094
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 169575 0.82 0.986926
Target:  5'- cGAGUGUAUAGUUUAGGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 169167 0.86 0.934406
Target:  5'- ---gAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 168401 0.68 1
Target:  5'- aAGUAUA-AGcCUUAGGgUUUAAAGGGu -3'
miRNA:   3'- cUUAUAUaUC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 167292 0.8 0.99543
Target:  5'- -uGUAUAUAaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 167185 0.81 0.993682
Target:  5'- -cGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 165979 0.8 0.996762
Target:  5'- -uGUAUAUGGCUUAuGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.