Results 1 - 20 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 109953 | 1.13 | 0.081113 |
Target: 5'- uGAAUAUAUAGCUUAGGUCUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 23650 | 1.04 | 0.227589 |
Target: 5'- uGAGUAUGUAGCUUAGGUgUUAAAGGGa -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 86483 | 1.03 | 0.260318 |
Target: 5'- uGAGUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 162782 | 1.03 | 0.260318 |
Target: 5'- uGAAUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 42265 | 1.03 | 0.260318 |
Target: 5'- uGAGUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 131169 | 1.03 | 0.260318 |
Target: 5'- uGAGUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 76126 | 1.02 | 0.304538 |
Target: 5'- ---cAUAUAGCUUAGGUCUUAAAGGGu -3' miRNA: 3'- cuuaUAUAUCGAAUCCAGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 172856 | 1.01 | 0.328724 |
Target: 5'- uGggUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- -CuuAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 80775 | 1.01 | 0.328724 |
Target: 5'- uGggUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- -CuuAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 18885 | 1 | 0.381251 |
Target: 5'- aAGUAUAUAGCUUAGGUgUUAAAGGGa -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 57267 | 0.98 | 0.429101 |
Target: 5'- aAGUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 16917 | 0.98 | 0.429101 |
Target: 5'- aAAUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 49993 | 0.98 | 0.459455 |
Target: 5'- uGAGUAUAUAGCUUAGGagUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 67030 | 0.98 | 0.459455 |
Target: 5'- uGAGUAUAUAGCUUAGGagUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 114436 | 0.97 | 0.480312 |
Target: 5'- uGAGUAUAUAGCUUAGGUgUUAAAGGa -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 20153 | 0.97 | 0.490912 |
Target: 5'- -cGUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 184895 | 0.97 | 0.50162 |
Target: 5'- -uGUAUAcAGCUUAGGUCUUAAAGGGu -3' miRNA: 3'- cuUAUAUaUCGAAUCCAGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 28813 | 0.97 | 0.50162 |
Target: 5'- -uGUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 138805 | 0.97 | 0.50162 |
Target: 5'- -uGUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 94183 | 0.97 | 0.50162 |
Target: 5'- -uGUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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