miRNA display CGI


Results 21 - 40 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 13225 0.96 0.523333
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 88865 0.96 0.523333
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 125575 0.96 0.534325
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 54377 0.96 0.534325
Target:  5'- -uAUGUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 122802 0.96 0.534325
Target:  5'- cGAGUAUAUAGCUUAGGggUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 135830 0.96 0.534325
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 104205 0.94 0.601682
Target:  5'- --uUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 6345 0.93 0.647262
Target:  5'- -uAUAUAUAGCUUAGGUUUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAGAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 179727 0.92 0.691474
Target:  5'- -uGUAUAUGGCUUAGGUCUuaaagauUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAGA-------AUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 88607 0.92 0.692598
Target:  5'- ---aGUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 154625 0.91 0.736929
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 145073 0.91 0.736929
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 131155 0.91 0.736929
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 136088 0.91 0.758466
Target:  5'- -uGUAUAUAGCUUAGGagUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 39307 0.9 0.779448
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 131990 0.9 0.799775
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 104865 0.89 0.828825
Target:  5'- -cAUAUAUAGCUUAGGUagguaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAg----AAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 87406 0.89 0.828825
Target:  5'- -uGUAUAUAGCUUAGGUa-UGAAGGGg -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 36354 0.89 0.838078
Target:  5'- uGAAUAUAUAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgaaUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 31457 0.89 0.838078
Target:  5'- uGAGUAUAUAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgaaUUUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.