miRNA display CGI


Results 61 - 80 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 97749 0.68 1
Target:  5'- ---cAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 4814 0.68 1
Target:  5'- aAGUAUAUAaCUUAGGagUUAAAGGc -3'
miRNA:   3'- cUUAUAUAUcGAAUCCagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 5214 0.7 1
Target:  5'- uGAGUAUAUcGCUUAGGUgUU--AGGu -3'
miRNA:   3'- -CUUAUAUAuCGAAUCCAgAAuuUCCc -5'
28286 5' -40.1 NC_005902.1 + 149878 0.7 1
Target:  5'- -uAUAUAUAGCUUAGaUgUUaAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 118682 0.7 1
Target:  5'- -uAUAUAUAGU-UAGGggUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGaAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 22654 0.7 1
Target:  5'- -cAUAUAUAGCUUAGaUgUUaAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 90094 0.71 1
Target:  5'- uGAGUAUAUAaCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUcGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 156949 0.71 1
Target:  5'- uGAGUAUAUAGCUUAaauaUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCGAAUccagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 90276 0.71 1
Target:  5'- uGAAUAUAUAGCUUAaGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 1450 0.71 1
Target:  5'- uGAGUAUAUAGCUUAaGUgUUAAAGc- -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 122674 0.7 1
Target:  5'- uGAGUGUAUAGCUUAGaGaUgUUAAAGa- -3'
miRNA:   3'- -CUUAUAUAUCGAAUC-C-AgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 159782 0.7 1
Target:  5'- aAGUAUAUAGCUaAGua-UUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAaUCcagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 136931 0.68 1
Target:  5'- uGAGUAUAUAGUgUAGGUaUUAAAGuGa -3'
miRNA:   3'- -CUUAUAUAUCGaAUCCAgAAUUUC-Cc -5'
28286 5' -40.1 NC_005902.1 + 58658 0.69 1
Target:  5'- uGAGUAUAUAGaacaagUA-GUCUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCga----AUcCAGAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 101108 0.69 1
Target:  5'- -uGUAUAUuGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAuCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 165756 0.69 1
Target:  5'- aAGUAUAUGuuaaCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cUUAUAUAUc---GAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 139108 0.69 1
Target:  5'- ---cAUAUAGCUUAGGUaUUAAcAGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUU-UCCc -5'
28286 5' -40.1 NC_005902.1 + 157207 0.69 1
Target:  5'- aAAUAUAUAGCUUAGGUaUUAAc--- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 111436 0.69 1
Target:  5'- -uAUAUAUAGCUUAuauaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUccagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 173499 0.7 1
Target:  5'- -uGUAUAUAaUUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.