miRNA display CGI


Results 41 - 60 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 28190 0.77 0.999685
Target:  5'- aAAUAUAUAGCUUAGGUgUUAAAu-- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 28813 0.97 0.50162
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 28964 0.7 1
Target:  5'- --cUGUAUAGCUUAGGUgUUAAc--- -3'
miRNA:   3'- cuuAUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 29134 0.85 0.954221
Target:  5'- -uAUAUAUAGUUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 29254 0.77 0.999488
Target:  5'- aAGUAUAUAGCUUAGGUgUU--AGGa -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAuuUCCc -5'
28286 5' -40.1 NC_005902.1 + 29492 0.89 0.838078
Target:  5'- aAAUAUAUAGCUUAGGUgUUaAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAA-UUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 29611 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 30829 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 31457 0.89 0.838078
Target:  5'- uGAGUAUAUAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgaaUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 34672 0.67 1
Target:  5'- uGAGUAUA-AGCuUUAGGaUUUAAAGGa -3'
miRNA:   3'- -CUUAUAUaUCG-AAUCCaGAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 34756 0.74 0.999988
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAGa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 36354 0.89 0.838078
Target:  5'- uGAAUAUAUAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgaaUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 36840 0.77 0.999597
Target:  5'- uGAGUAUAUAGCUUAGGUaUUAAAa-- -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 37290 0.69 1
Target:  5'- ---cAUAUAGCUUAaGUgUUAAAGGa -3'
miRNA:   3'- cuuaUAUAUCGAAUcCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 38451 0.81 0.992626
Target:  5'- -uAUAUAUAGCUUAGGUgUUAcAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUuUCCc -5'
28286 5' -40.1 NC_005902.1 + 39307 0.9 0.779448
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 39614 0.84 0.966106
Target:  5'- uGAAU-UAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- -CUUAuAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 40093 0.87 0.903005
Target:  5'- uGAGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 40946 0.66 1
Target:  5'- aAAUGUAUAGCUUGGGUa-------- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgaauuuccc -5'
28286 5' -40.1 NC_005902.1 + 40997 0.69 1
Target:  5'- ---cAUAUAGCUUAGGUgcUAAAGa- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgaAUUUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.