Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28290 | 3' | -33.5 | NC_005902.1 | + | 73647 | 0.68 | 1 |
Target: 5'- --cUC-UUUAAUAUUUAaAGCUUAUAUa -3' miRNA: 3'- auuAGaAAAUUGUAAAU-UCGAAUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 118517 | 0.69 | 1 |
Target: 5'- aGAUUUUUUAAUcUUUGAGCU-AUAUa -3' miRNA: 3'- aUUAGAAAAUUGuAAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 118649 | 0.69 | 1 |
Target: 5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3' miRNA: 3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 118294 | 0.69 | 1 |
Target: 5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3' miRNA: 3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 51674 | 0.69 | 1 |
Target: 5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3' miRNA: 3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 153032 | 0.7 | 1 |
Target: 5'- ---aCUUUUaAACAUUUAAGC-UAUGUa -3' miRNA: 3'- auuaGAAAA-UUGUAAAUUCGaAUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 48250 | 0.73 | 1 |
Target: 5'- uUAAUCcUUUAACAcUUAAGCUaUAUAUa -3' miRNA: 3'- -AUUAGaAAAUUGUaAAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 36163 | 0.73 | 1 |
Target: 5'- ---cCUUUUAACAUcUAAGCUaUAUAUa -3' miRNA: 3'- auuaGAAAAUUGUAaAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 163388 | 0.73 | 1 |
Target: 5'- ---cCUUUUAACAUcUAAGCUaUAUAUg -3' miRNA: 3'- auuaGAAAAUUGUAaAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 174460 | 0.72 | 1 |
Target: 5'- uUAAUCUUUUuACAUcUAAGCU-AUAUa -3' miRNA: 3'- -AUUAGAAAAuUGUAaAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 169125 | 0.72 | 1 |
Target: 5'- --uUC-UUUAACAUUUAAGCUaUAUAg -3' miRNA: 3'- auuAGaAAAUUGUAAAUUCGA-AUAUa -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 33078 | 0.72 | 1 |
Target: 5'- uUAAUCUUUUAAauccuaAGGCUUAUAUa -3' miRNA: 3'- -AUUAGAAAAUUguaaa-UUCGAAUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 134157 | 0.74 | 1 |
Target: 5'- uUAGUCaUUUAACAUcUAAGCUaUAUAUa -3' miRNA: 3'- -AUUAGaAAAUUGUAaAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 4196 | 0.75 | 1 |
Target: 5'- ---cCUUUUAAUAUUUAAGCUaUAUAa -3' miRNA: 3'- auuaGAAAAUUGUAAAUUCGA-AUAUa -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 29086 | 0.76 | 1 |
Target: 5'- uUAAUCcUUUAAUAUUUAAGCU-AUAUa -3' miRNA: 3'- -AUUAGaAAAUUGUAAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 92156 | 0.77 | 1 |
Target: 5'- uUAAUCUUUUAACAacUAAGCU-AUAUa -3' miRNA: 3'- -AUUAGAAAAUUGUaaAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 156339 | 0.77 | 1 |
Target: 5'- ---cUUUUUAACAUUUAAGCUaUAUAUg -3' miRNA: 3'- auuaGAAAAUUGUAAAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 41019 | 0.77 | 1 |
Target: 5'- aUAAUCUUUUAAUAcUUAAGCU-AUAUa -3' miRNA: 3'- -AUUAGAAAAUUGUaAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 162018 | 0.81 | 1 |
Target: 5'- -cAUCUUUUAAUAUUUAAGCaUAUAc -3' miRNA: 3'- auUAGAAAAUUGUAAAUUCGaAUAUa -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 103990 | 0.66 | 1 |
Target: 5'- -----aUUUAAUAUUUAAGCUaUAUAUu -3' miRNA: 3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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