Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28290 | 3' | -33.5 | NC_005902.1 | + | 131060 | 0.69 | 1 |
Target: 5'- ---aCUUUUuaAACAUUUAAGCaUAUAUu -3' miRNA: 3'- auuaGAAAA--UUGUAAAUUCGaAUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 32864 | 0.69 | 1 |
Target: 5'- -uAUCUUUUAAUAccuaAAGCUUAUAc -3' miRNA: 3'- auUAGAAAAUUGUaaa-UUCGAAUAUa -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 95764 | 0.7 | 1 |
Target: 5'- ---cCUUUUAACAcUUAAGCUaUAUAUu -3' miRNA: 3'- auuaGAAAAUUGUaAAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 8169 | 0.71 | 1 |
Target: 5'- uUAAUCc--UAACAUUUAAGCU-AUAUa -3' miRNA: 3'- -AUUAGaaaAUUGUAAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 165946 | 0.66 | 1 |
Target: 5'- ---cCUUUUAAUAcUUAAGCUaUAUAUa -3' miRNA: 3'- auuaGAAAAUUGUaAAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 68934 | 0.69 | 1 |
Target: 5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3' miRNA: 3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 125532 | 0.71 | 1 |
Target: 5'- cAGUUUUaaaaaagUUAACAUUUAAGCUaUAUAUa -3' miRNA: 3'- aUUAGAA-------AAUUGUAAAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 135985 | 0.67 | 1 |
Target: 5'- uUAAUCUUUUAACAccUAAGUaUAUu- -3' miRNA: 3'- -AUUAGAAAAUUGUaaAUUCGaAUAua -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 141995 | 0.71 | 1 |
Target: 5'- --cUC-UUUAACAUUUAAGCU-AUAUa -3' miRNA: 3'- auuAGaAAAUUGUAAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 137434 | 0.68 | 1 |
Target: 5'- ---cCUUUUAACAUcUAAGCUa---- -3' miRNA: 3'- auuaGAAAAUUGUAaAUUCGAauaua -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 108901 | 0.66 | 1 |
Target: 5'- ---cCUUUUAACAgcUAGGCU-AUAUa -3' miRNA: 3'- auuaGAAAAUUGUaaAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 48113 | 0.7 | 1 |
Target: 5'- -----cUUUAACAUUUAAGCU-AUAUa -3' miRNA: 3'- auuagaAAAUUGUAAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 21310 | 0.7 | 1 |
Target: 5'- ---cCUUUUAACAUcUAAGCU-AUAUa -3' miRNA: 3'- auuaGAAAAUUGUAaAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 99623 | 0.71 | 1 |
Target: 5'- ------aUUAACAUUUAAGCUgUAUAUg -3' miRNA: 3'- auuagaaAAUUGUAAAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 12737 | 0.71 | 1 |
Target: 5'- --cUCUUUUAACcccauAGCUUAUAUa -3' miRNA: 3'- auuAGAAAAUUGuaaauUCGAAUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 40672 | 0.71 | 1 |
Target: 5'- -----cUUUAACGUUUAAGCUaUAUAUa -3' miRNA: 3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 73647 | 0.68 | 1 |
Target: 5'- --cUC-UUUAAUAUUUAaAGCUUAUAUa -3' miRNA: 3'- auuAGaAAAUUGUAAAU-UCGAAUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 15150 | 0.7 | 1 |
Target: 5'- ---cCUUUUAACAUgUAAGCU-AUAUa -3' miRNA: 3'- auuaGAAAAUUGUAaAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 29612 | 0.7 | 1 |
Target: 5'- -----cUUUAACAUUUAAGCU-AUAUa -3' miRNA: 3'- auuagaAAAUUGUAAAUUCGAaUAUA- -5' |
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28290 | 3' | -33.5 | NC_005902.1 | + | 134581 | 0.7 | 1 |
Target: 5'- -----cUUUAACAUUUAAGCU-AUAUa -3' miRNA: 3'- auuagaAAAUUGUAAAUUCGAaUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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