miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 48597 0.86 0.785754
Target:  5'- aGCAUAGUGAGUgaauauauaguUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUCGUUCG-----------AAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 49465 0.69 1
Target:  5'- aGCAaauaAGUAuauaaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUa---UCGUuc---GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 49982 0.85 0.852073
Target:  5'- aGCAUGGCAagugaguauauAGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 50044 0.74 0.999702
Target:  5'- cGCAaugAGUGAauauaCUUAGGUGUUAAAAGAu -3'
miRNA:   3'- -CGUa--UCGUUc----GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 50224 0.72 0.999969
Target:  5'- ---aAGCuauauauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- cguaUCGu------UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 50492 0.77 0.995669
Target:  5'- aGUGUGuGUAucuAGUUUAGGUGUUAAAGGAu -3'
miRNA:   3'- -CGUAU-CGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 51634 0.7 0.999996
Target:  5'- aGCGUAGCGAGCUUAaaUGUaAAAAa- -3'
miRNA:   3'- -CGUAUCGUUCGAAUccACAaUUUUcu -5'
28290 5' -42 NC_005902.1 + 52206 0.69 1
Target:  5'- gGUAUAuCA--CUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGUucGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 52367 0.71 0.999984
Target:  5'- uGUAUAu--AGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 54373 0.81 0.951797
Target:  5'- uGUGUAuGUAuAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAU-CGU-UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 57267 0.8 0.967601
Target:  5'- ---aAGUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 65790 0.84 0.892361
Target:  5'- aGCAUgAGCAuauAGCUcAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUA-UCGU---UCGAaUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 67019 0.74 0.999702
Target:  5'- aGCcUAGCGaaugaguauauAGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- -CGuAUCGU-----------UCGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 67735 0.68 1
Target:  5'- aGCAUaucgagugAGUAuauAGCUUAaGUGUUAAAAGGu -3'
miRNA:   3'- -CGUA--------UCGU---UCGAAUcCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 68312 0.68 1
Target:  5'- uGCAUAu--AGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 68965 0.68 1
Target:  5'- -uGUAGCAAGCUUaaacauuaaaGGGUGUUu----- -3'
miRNA:   3'- cgUAUCGUUCGAA----------UCCACAAuuuucu -5'
28290 5' -42 NC_005902.1 + 69410 0.72 0.999958
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAAa- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 71481 0.81 0.953574
Target:  5'- aCAUAGCAuauauuuguuuauauAGCcUAGGUGUUAAAGGGg -3'
miRNA:   3'- cGUAUCGU---------------UCGaAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 71688 0.72 0.999969
Target:  5'- uGUAUAu--AGCUUAGGUGUUAGAAu- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 74810 0.8 0.964052
Target:  5'- uGUAUAuauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.