miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 25149 0.7 0.999995
Target:  5'- aCAUAGCAagugaguauauAGCUUAGGgGUUAAAu-- -3'
miRNA:   3'- cGUAUCGU-----------UCGAAUCCaCAAUUUucu -5'
28290 5' -42 NC_005902.1 + 28178 0.82 0.937016
Target:  5'- aGUGUAGCAagcaaauauauAGCUUAGGUGUUAAAuauuGAa -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAUUUu---CU- -5'
28290 5' -42 NC_005902.1 + 28813 0.79 0.981688
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 28957 0.69 1
Target:  5'- uGCuauGCuguauAGCUUAGGUGUUAAc--- -3'
miRNA:   3'- -CGuauCGu----UCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 29254 0.72 0.999958
Target:  5'- ---aAGUAuauAGCUUAGGUGUUAGGAu- -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 29480 0.91 0.576187
Target:  5'- aGCAUAGUGaguaaauauauAGCUUAGGUGUUAAAAGGg -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 29611 0.8 0.973941
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 31115 0.7 0.999999
Target:  5'- uGCAgcgaaugAGUAuauAGCUUGGaUGUUAAAAGAu -3'
miRNA:   3'- -CGUa------UCGU---UCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 31446 0.69 1
Target:  5'- aGUGUAGCAagugaguauauAGCUUAGGUaaaggGUUAAAAa- -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCA-----CAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 34741 0.83 0.918996
Target:  5'- aGUGUAGCAacuaaauauauauAGCUUAGGUGUUAAGAu- -3'
miRNA:   3'- -CGUAUCGU-------------UCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 36343 0.67 1
Target:  5'- aGCAUAGUGaaugaauauauAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCAcaaUUUUCU- -5'
28290 5' -42 NC_005902.1 + 38450 0.69 0.999999
Target:  5'- uUAUAuauAGCUUAGGUGUUAcAGGAu -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAUuUUCU- -5'
28290 5' -42 NC_005902.1 + 39307 0.81 0.951797
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 39607 0.93 0.467956
Target:  5'- aGCAUAGUGaauuauAGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- -CGUAUCGU------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 42266 0.8 0.964052
Target:  5'- ---gAGUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 43009 0.77 0.994006
Target:  5'- aGUAUAGCAaaugaguauauAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 43874 0.83 0.919621
Target:  5'- aGUGUAGCAaauaaguauauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 45121 0.67 1
Target:  5'- cGUAUAu--AGCUUAGGUGUUAu--GAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUuuuCU- -5'
28290 5' -42 NC_005902.1 + 48265 0.73 0.999897
Target:  5'- uGUAUAuauAGCUUAGGUGUUAAAAa- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 48596 0.76 0.996934
Target:  5'- aCAUAGCAaaucaguguauAGCUUAGaUGUUAAAAGGu -3'
miRNA:   3'- cGUAUCGU-----------UCGAAUCcACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.