Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28290 | 5' | -42 | NC_005902.1 | + | 25149 | 0.7 | 0.999995 |
Target: 5'- aCAUAGCAagugaguauauAGCUUAGGgGUUAAAu-- -3' miRNA: 3'- cGUAUCGU-----------UCGAAUCCaCAAUUUucu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 28178 | 0.82 | 0.937016 |
Target: 5'- aGUGUAGCAagcaaauauauAGCUUAGGUGUUAAAuauuGAa -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCACAAUUUu---CU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 28813 | 0.79 | 0.981688 |
Target: 5'- uGUAUAu--AGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 28957 | 0.69 | 1 |
Target: 5'- uGCuauGCuguauAGCUUAGGUGUUAAc--- -3' miRNA: 3'- -CGuauCGu----UCGAAUCCACAAUUuucu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 29254 | 0.72 | 0.999958 |
Target: 5'- ---aAGUAuauAGCUUAGGUGUUAGGAu- -3' miRNA: 3'- cguaUCGU---UCGAAUCCACAAUUUUcu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 29480 | 0.91 | 0.576187 |
Target: 5'- aGCAUAGUGaguaaauauauAGCUUAGGUGUUAAAAGGg -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 29611 | 0.8 | 0.973941 |
Target: 5'- uGUAUAu--AGCUUAGGUGUUAAAAGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 31115 | 0.7 | 0.999999 |
Target: 5'- uGCAgcgaaugAGUAuauAGCUUGGaUGUUAAAAGAu -3' miRNA: 3'- -CGUa------UCGU---UCGAAUCcACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 31446 | 0.69 | 1 |
Target: 5'- aGUGUAGCAagugaguauauAGCUUAGGUaaaggGUUAAAAa- -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCA-----CAAUUUUcu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 34741 | 0.83 | 0.918996 |
Target: 5'- aGUGUAGCAacuaaauauauauAGCUUAGGUGUUAAGAu- -3' miRNA: 3'- -CGUAUCGU-------------UCGAAUCCACAAUUUUcu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 36343 | 0.67 | 1 |
Target: 5'- aGCAUAGUGaaugaauauauAGCUUAGGU---AAAGGGu -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCAcaaUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 38450 | 0.69 | 0.999999 |
Target: 5'- uUAUAuauAGCUUAGGUGUUAcAGGAu -3' miRNA: 3'- cGUAUcguUCGAAUCCACAAUuUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 39307 | 0.81 | 0.951797 |
Target: 5'- uGUAUAu--AGCUUAGGUGUUAAAGGAu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 39607 | 0.93 | 0.467956 |
Target: 5'- aGCAUAGUGaauuauAGCUUAGGUGUUAAAGGAu -3' miRNA: 3'- -CGUAUCGU------UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 42266 | 0.8 | 0.964052 |
Target: 5'- ---gAGUAuauAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- cguaUCGU---UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 43009 | 0.77 | 0.994006 |
Target: 5'- aGUAUAGCAaaugaguauauAGCUUAGaUGUUAAAGGGu -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCcACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 43874 | 0.83 | 0.919621 |
Target: 5'- aGUGUAGCAaauaaguauauAGCUUAGGUGUU-AAAGAg -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCACAAuUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 45121 | 0.67 | 1 |
Target: 5'- cGUAUAu--AGCUUAGGUGUUAu--GAu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUuuuCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 48265 | 0.73 | 0.999897 |
Target: 5'- uGUAUAuauAGCUUAGGUGUUAAAAa- -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 48596 | 0.76 | 0.996934 |
Target: 5'- aCAUAGCAaaucaguguauAGCUUAGaUGUUAAAAGGu -3' miRNA: 3'- cGUAUCGU-----------UCGAAUCcACAAUUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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