miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 1174 0.82 0.941722
Target:  5'- ---aAGCAuauauacAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU-------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 1439 0.74 0.999702
Target:  5'- aGCAUAGCAagugaguauauAGCUUAaGUGUUAAAGc- -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUcCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 3107 0.7 0.999997
Target:  5'- uCAUAuauAGCUUAGGUGUUAAAAu- -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 3478 0.71 0.999978
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAAu- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 4802 0.72 0.999958
Target:  5'- aGCAUAGUGAGCaaguauauaacUUAGGaGUUAAAGGc -3'
miRNA:   3'- -CGUAUCGUUCG-----------AAUCCaCAAUUUUCu -5'
28290 5' -42 NC_005902.1 + 5215 0.7 0.999996
Target:  5'- ---gAGUAuaucGCUUAGGUGUUAGGuAGAa -3'
miRNA:   3'- cguaUCGUu---CGAAUCCACAAUUU-UCU- -5'
28290 5' -42 NC_005902.1 + 5420 0.7 0.999998
Target:  5'- uCAUAuauAGCUUAGGUGUU-AAAGAa -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 6343 0.68 1
Target:  5'- aGUAUAuauAGCUUAGGUuUUAAAGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCAcAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 8444 0.74 0.999702
Target:  5'- aGUAUAuCAaauaauAGUUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcGU------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 9289 0.66 1
Target:  5'- uGCAUAGCAuuaaaAGCUucuucUGGG-GUUAAAu-- -3'
miRNA:   3'- -CGUAUCGU-----UCGA-----AUCCaCAAUUUucu -5'
28290 5' -42 NC_005902.1 + 11449 0.68 1
Target:  5'- cGUAUAu--AGCUUAGGUGUUAAc--- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 13224 0.78 0.991865
Target:  5'- uCAUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 15325 0.71 0.999988
Target:  5'- aUAUAuGCAauuauucauauauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- cGUAU-CGU-------------UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 15507 0.75 0.999052
Target:  5'- uGUAUAuauAGUUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 16905 0.82 0.937016
Target:  5'- aGCAUAuCAaacaaauauauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGU-----------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 18779 0.71 0.999983
Target:  5'- aGCAUAGUAAacgaauauauaaCUUAGGUGUUAAAAa- -3'
miRNA:   3'- -CGUAUCGUUc-----------GAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 18880 0.82 0.93151
Target:  5'- cGCuuaAGUAuauAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- -CGua-UCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 20153 0.8 0.973941
Target:  5'- cGUAUAu--AGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 20322 0.75 0.998249
Target:  5'- uGUAUAuauAGCUUAGGUGUUAAuAGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuUCU- -5'
28290 5' -42 NC_005902.1 + 23641 0.87 0.743894
Target:  5'- -uGUAGCAagugaguauguAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- cgUAUCGU-----------UCGAAUCCACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.