miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 71481 0.81 0.953574
Target:  5'- aCAUAGCAuauauuuguuuauauAGCcUAGGUGUUAAAGGGg -3'
miRNA:   3'- cGUAUCGU---------------UCGaAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 148271 1.14 0.039952
Target:  5'- aGCAUAGCAAGCUUAGGUGUUAAAAGAu -3'
miRNA:   3'- -CGUAUCGUUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 29480 0.91 0.576187
Target:  5'- aGCAUAGUGaguaaauauauAGCUUAGGUGUUAAAAGGg -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 34741 0.83 0.918996
Target:  5'- aGUGUAGCAacuaaauauauauAGCUUAGGUGUUAAGAu- -3'
miRNA:   3'- -CGUAUCGU-------------UCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 16905 0.82 0.937016
Target:  5'- aGCAUAuCAaacaaauauauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGU-----------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 48597 0.86 0.785754
Target:  5'- aGCAUAGUGAGUgaauauauaguUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUCGUUCG-----------AAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 65790 0.84 0.892361
Target:  5'- aGCAUgAGCAuauAGCUcAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUA-UCGU---UCGAaUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 80766 0.83 0.906566
Target:  5'- uGCAgugagugGGUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUa------UCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 54373 0.81 0.951797
Target:  5'- uGUGUAuGUAuAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAU-CGU-UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 154944 0.8 0.964052
Target:  5'- cGCu--GCAcuuguucauAGCUUGGGUGUUAAAAGGu -3'
miRNA:   3'- -CGuauCGU---------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 181418 0.66 1
Target:  5'- aGCAUaaagAGUAAguauaucGCUUAGaUGUUAAAGGAu -3'
miRNA:   3'- -CGUA----UCGUU-------CGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 167183 0.85 0.852073
Target:  5'- aGCGUAuauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 114430 0.86 0.805719
Target:  5'- gGCAagugAGUAuauAGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- -CGUa---UCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 136268 0.81 0.947157
Target:  5'- gGUAUAGCAaacaaauauauAGUUUAGGUGUUGAGAuGAa -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAUUUU-CU- -5'
28290 5' -42 NC_005902.1 + 39307 0.81 0.951797
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 142022 0.84 0.868976
Target:  5'- uGCGU-GUAuauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAuCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 74810 0.8 0.964052
Target:  5'- uGUAUAuauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 20153 0.8 0.973941
Target:  5'- cGUAUAu--AGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 104194 0.83 0.899605
Target:  5'- --uUAGCAuuuguuuauauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguAUCGU-----------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 1174 0.82 0.941722
Target:  5'- ---aAGCAuauauacAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU-------UCGAAUCCACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.