Results 1 - 20 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28290 | 5' | -42 | NC_005902.1 | + | 51634 | 0.7 | 0.999996 |
Target: 5'- aGCGUAGCGAGCUUAaaUGUaAAAAa- -3' miRNA: 3'- -CGUAUCGUUCGAAUccACAaUUUUcu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 182662 | 0.69 | 1 |
Target: 5'- uGUAU-GUAuAGCUUAGGUGUaacccuuuaaaaacUAAAAGAu -3' miRNA: 3'- -CGUAuCGU-UCGAAUCCACA--------------AUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 31446 | 0.69 | 1 |
Target: 5'- aGUGUAGCAagugaguauauAGCUUAGGUaaaggGUUAAAAa- -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCA-----CAAUUUUcu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 49465 | 0.69 | 1 |
Target: 5'- aGCAaauaAGUAuauaaCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUa---UCGUuc---GAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 164721 | 0.69 | 1 |
Target: 5'- aUAUAGUAagaguauauAGCUUAGaUGUUAAAAGGu -3' miRNA: 3'- cGUAUCGU---------UCGAAUCcACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 38450 | 0.69 | 0.999999 |
Target: 5'- uUAUAuauAGCUUAGGUGUUAcAGGAu -3' miRNA: 3'- cGUAUcguUCGAAUCCACAAUuUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 76124 | 0.7 | 0.999999 |
Target: 5'- uGCAUAu--AGCUUAGGUcUUAAAGGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCCAcAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 31115 | 0.7 | 0.999999 |
Target: 5'- uGCAgcgaaugAGUAuauAGCUUGGaUGUUAAAAGAu -3' miRNA: 3'- -CGUa------UCGU---UCGAAUCcACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 151332 | 0.7 | 0.999997 |
Target: 5'- aUAUAGUA----UAGGUGUUAAAAGAa -3' miRNA: 3'- cGUAUCGUucgaAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 157100 | 0.69 | 1 |
Target: 5'- aGCAUAGCAaauaaguauaAGCuUUAGGauUUAAAGGGu -3' miRNA: 3'- -CGUAUCGU----------UCG-AAUCCacAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 151227 | 0.69 | 1 |
Target: 5'- aGUAUA-UAA-CUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcGUUcGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 137649 | 0.68 | 1 |
Target: 5'- aGCAUauugaauaAGUAcauaaCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUA--------UCGUuc---GAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 137785 | 0.66 | 1 |
Target: 5'- uGUAUAuauAGCUUAaGUGUUAAAGGAu -3' miRNA: 3'- -CGUAUcguUCGAAUcCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 36343 | 0.67 | 1 |
Target: 5'- aGCAUAGUGaaugaauauauAGCUUAGGU---AAAGGGu -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCAcaaUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 171283 | 0.67 | 1 |
Target: 5'- --uUAGCAAcauGUUUGGG-GUUAAAGGGu -3' miRNA: 3'- cguAUCGUU---CGAAUCCaCAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 116816 | 0.67 | 1 |
Target: 5'- ---gAGUAuaCUUAGGUGUUAAAGGu -3' miRNA: 3'- cguaUCGUucGAAUCCACAAUUUUCu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 93880 | 0.67 | 1 |
Target: 5'- ---aAGUAuauAGCUUAGuUGUUAAAAGAu -3' miRNA: 3'- cguaUCGU---UCGAAUCcACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 153163 | 0.68 | 1 |
Target: 5'- aGUAUAGUAaauuaguauaAGCuUUAGGUaUUAAAAGAu -3' miRNA: 3'- -CGUAUCGU----------UCG-AAUCCAcAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 11449 | 0.68 | 1 |
Target: 5'- cGUAUAu--AGCUUAGGUGUUAAc--- -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUuucu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 155242 | 0.68 | 1 |
Target: 5'- aGCGUAuauAGCUUAGaUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCcACAAUUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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