miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 133259 0.66 1
Target:  5'- ---cAGCAuucacuuuauauaaCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- cguaUCGUuc------------GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 163476 0.66 1
Target:  5'- aGUAUAGCAaacaaguauAGcCUUAGGauUUAAAGGAu -3'
miRNA:   3'- -CGUAUCGU---------UC-GAAUCCacAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 9289 0.66 1
Target:  5'- uGCAUAGCAuuaaaAGCUucuucUGGG-GUUAAAu-- -3'
miRNA:   3'- -CGUAUCGU-----UCGA-----AUCCaCAAUUUucu -5'
28290 5' -42 NC_005902.1 + 181418 0.66 1
Target:  5'- aGCAUaaagAGUAAguauaucGCUUAGaUGUUAAAGGAu -3'
miRNA:   3'- -CGUA----UCGUU-------CGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 162631 0.66 1
Target:  5'- uGUAUAu--AGCUUGGGUGUUAAc--- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 137785 0.66 1
Target:  5'- uGUAUAuauAGCUUAaGUGUUAAAGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUcCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 93880 0.67 1
Target:  5'- ---aAGUAuauAGCUUAGuUGUUAAAAGAu -3'
miRNA:   3'- cguaUCGU---UCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 36343 0.67 1
Target:  5'- aGCAUAGUGaaugaauauauAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCAcaaUUUUCU- -5'
28290 5' -42 NC_005902.1 + 136088 0.67 1
Target:  5'- uGUAUAu--AGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 110134 0.67 1
Target:  5'- uGCuu-GUAuauAGCUUAGGUaUUAAAGGAu -3'
miRNA:   3'- -CGuauCGU---UCGAAUCCAcAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 45121 0.67 1
Target:  5'- cGUAUAu--AGCUUAGGUGUUAu--GAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUuuuCU- -5'
28290 5' -42 NC_005902.1 + 171283 0.67 1
Target:  5'- --uUAGCAAcauGUUUGGG-GUUAAAGGGu -3'
miRNA:   3'- cguAUCGUU---CGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 116816 0.67 1
Target:  5'- ---gAGUAuaCUUAGGUGUUAAAGGu -3'
miRNA:   3'- cguaUCGUucGAAUCCACAAUUUUCu -5'
28290 5' -42 NC_005902.1 + 77113 0.67 1
Target:  5'- -aAUAGUAAaUUUAGGUGUUAAAuAGGu -3'
miRNA:   3'- cgUAUCGUUcGAAUCCACAAUUU-UCU- -5'
28290 5' -42 NC_005902.1 + 170617 0.68 1
Target:  5'- uUAUAuauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 97477 0.68 1
Target:  5'- uGUAUA-UAA-CUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGUUcGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 68965 0.68 1
Target:  5'- -uGUAGCAAGCUUaaacauuaaaGGGUGUUu----- -3'
miRNA:   3'- cgUAUCGUUCGAA----------UCCACAAuuuucu -5'
28290 5' -42 NC_005902.1 + 68312 0.68 1
Target:  5'- uGCAUAu--AGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 11449 0.68 1
Target:  5'- cGUAUAu--AGCUUAGGUGUUAAc--- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 137649 0.68 1
Target:  5'- aGCAUauugaauaAGUAcauaaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUA--------UCGUuc---GAAUCCACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.