Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28290 | 5' | -42 | NC_005902.1 | + | 167292 | 0.68 | 1 |
Target: 5'- uGUAUA-UAA-CUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcGUUcGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 170617 | 0.68 | 1 |
Target: 5'- uUAUAuauAGCUUAGGUGUU-AAAGAg -3' miRNA: 3'- cGUAUcguUCGAAUCCACAAuUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 153163 | 0.68 | 1 |
Target: 5'- aGUAUAGUAaauuaguauaAGCuUUAGGUaUUAAAAGAu -3' miRNA: 3'- -CGUAUCGU----------UCG-AAUCCAcAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 11449 | 0.68 | 1 |
Target: 5'- cGUAUAu--AGCUUAGGUGUUAAc--- -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUuucu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 155242 | 0.68 | 1 |
Target: 5'- aGCGUAuauAGCUUAGaUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCcACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 137649 | 0.68 | 1 |
Target: 5'- aGCAUauugaauaAGUAcauaaCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUA--------UCGUuc---GAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 28957 | 0.69 | 1 |
Target: 5'- uGCuauGCuguauAGCUUAGGUGUUAAc--- -3' miRNA: 3'- -CGuauCGu----UCGAAUCCACAAUUuucu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 76232 | 0.69 | 0.999999 |
Target: 5'- aGUGUAGUGAcuaaauauauaaCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAUCGUUc-----------GAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 113820 | 0.69 | 1 |
Target: 5'- uGUAUAuauAGUUUAGGUGUUAAcGGAu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUuUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 151227 | 0.69 | 1 |
Target: 5'- aGUAUA-UAA-CUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcGUUcGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 157100 | 0.69 | 1 |
Target: 5'- aGCAUAGCAaauaaguauaAGCuUUAGGauUUAAAGGGu -3' miRNA: 3'- -CGUAUCGU----------UCG-AAUCCacAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 182662 | 0.69 | 1 |
Target: 5'- uGUAU-GUAuAGCUUAGGUGUaacccuuuaaaaacUAAAAGAu -3' miRNA: 3'- -CGUAuCGU-UCGAAUCCACA--------------AUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 164721 | 0.69 | 1 |
Target: 5'- aUAUAGUAagaguauauAGCUUAGaUGUUAAAAGGu -3' miRNA: 3'- cGUAUCGU---------UCGAAUCcACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 38450 | 0.69 | 0.999999 |
Target: 5'- uUAUAuauAGCUUAGGUGUUAcAGGAu -3' miRNA: 3'- cGUAUcguUCGAAUCCACAAUuUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 49465 | 0.69 | 1 |
Target: 5'- aGCAaauaAGUAuauaaCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUa---UCGUuc---GAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 31446 | 0.69 | 1 |
Target: 5'- aGUGUAGCAagugaguauauAGCUUAGGUaaaggGUUAAAAa- -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCA-----CAAUUUUcu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 52206 | 0.69 | 1 |
Target: 5'- gGUAUAuCA--CUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcGUucGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 156827 | 0.7 | 0.999998 |
Target: 5'- uCAUAuauAGCUUAGGUGUU-AAAGAg -3' miRNA: 3'- cGUAUcguUCGAAUCCACAAuUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 76124 | 0.7 | 0.999999 |
Target: 5'- uGCAUAu--AGCUUAGGUcUUAAAGGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCCAcAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 182964 | 0.7 | 0.999996 |
Target: 5'- uGUAUAuauAGCUUAGGUGUUAAAu-- -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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