Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28290 | 5' | -42 | NC_005902.1 | + | 122792 | 0.78 | 0.987564 |
Target: 5'- aCAUAGCGaccgaguauauAGCUUAGGgGUUAAAGGGu -3' miRNA: 3'- cGUAUCGU-----------UCGAAUCCaCAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 20153 | 0.8 | 0.973941 |
Target: 5'- cGUAUAu--AGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 16905 | 0.82 | 0.937016 |
Target: 5'- aGCAUAuCAaacaaauauauAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAUcGU-----------UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 114430 | 0.86 | 0.805719 |
Target: 5'- gGCAagugAGUAuauAGCUUAGGUGUUAAAGGAu -3' miRNA: 3'- -CGUa---UCGU---UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 3478 | 0.71 | 0.999978 |
Target: 5'- uGUAUAu--AGCUUAGGUGUUAAAAu- -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 125574 | 0.75 | 0.998249 |
Target: 5'- uUAUAuauAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- cGUAUcguUCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 74810 | 0.8 | 0.964052 |
Target: 5'- uGUAUAuauAGCUUAGGUGUUAAAAGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 48597 | 0.86 | 0.785754 |
Target: 5'- aGCAUAGUGAGUgaauauauaguUUAGGUGUUAAAAGGu -3' miRNA: 3'- -CGUAUCGUUCG-----------AAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 20322 | 0.75 | 0.998249 |
Target: 5'- uGUAUAuauAGCUUAGGUGUUAAuAGAu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUuUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 29480 | 0.91 | 0.576187 |
Target: 5'- aGCAUAGUGaguaaauauauAGCUUAGGUGUUAAAAGGg -3' miRNA: 3'- -CGUAUCGU-----------UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 154944 | 0.8 | 0.964052 |
Target: 5'- cGCu--GCAcuuguucauAGCUUGGGUGUUAAAAGGu -3' miRNA: 3'- -CGuauCGU---------UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 157888 | 0.78 | 0.991865 |
Target: 5'- uUAUAu--AGCUUAGGUGUUAAAAGAu -3' miRNA: 3'- cGUAUcguUCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 54373 | 0.81 | 0.951797 |
Target: 5'- uGUGUAuGUAuAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -CGUAU-CGU-UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 1174 | 0.82 | 0.941722 |
Target: 5'- ---aAGCAuauauacAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- cguaUCGU-------UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 104194 | 0.83 | 0.899605 |
Target: 5'- --uUAGCAuuuguuuauauAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- cguAUCGU-----------UCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 167183 | 0.85 | 0.852073 |
Target: 5'- aGCGUAuauAGCUUAGGUGUUAAAAGGu -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 107170 | 0.71 | 0.999992 |
Target: 5'- aGUGUAGCAaaugaguauauAGCUUaAGG-GUUAAAAGGu -3' miRNA: 3'- -CGUAUCGU-----------UCGAA-UCCaCAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 52367 | 0.71 | 0.999984 |
Target: 5'- uGUAUAu--AGCUUAGGUGUU-AAAGAg -3' miRNA: 3'- -CGUAUcguUCGAAUCCACAAuUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 134355 | 0.74 | 0.999702 |
Target: 5'- aGCAcAGCAaaugaguauauAGCUUAaGUGUUAAAAGGg -3' miRNA: 3'- -CGUaUCGU-----------UCGAAUcCACAAUUUUCU- -5' |
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28290 | 5' | -42 | NC_005902.1 | + | 169573 | 0.75 | 0.998249 |
Target: 5'- uGCG-AGUguauAGUUUAGGUGUUAAAAGGu -3' miRNA: 3'- -CGUaUCGu---UCGAAUCCACAAUUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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