miRNA display CGI


Results 21 - 40 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 43874 0.83 0.919621
Target:  5'- aGUGUAGCAaauaaguauauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 80088 0.82 0.93151
Target:  5'- uGCAUuuauuuGUAuauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAu-----CGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 18880 0.82 0.93151
Target:  5'- cGCuuaAGUAuauAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- -CGua-UCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 28178 0.82 0.937016
Target:  5'- aGUGUAGCAagcaaauauauAGCUUAGGUGUUAAAuauuGAa -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAUUUu---CU- -5'
28290 5' -42 NC_005902.1 + 16905 0.82 0.937016
Target:  5'- aGCAUAuCAaacaaauauauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGU-----------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 1174 0.82 0.941722
Target:  5'- ---aAGCAuauauacAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU-------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 136268 0.81 0.947157
Target:  5'- gGUAUAGCAaacaaauauauAGUUUAGGUGUUGAGAuGAa -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAUUUU-CU- -5'
28290 5' -42 NC_005902.1 + 39307 0.81 0.951797
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 54373 0.81 0.951797
Target:  5'- uGUGUAuGUAuAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAU-CGU-UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 71481 0.81 0.953574
Target:  5'- aCAUAGCAuauauuuguuuauauAGCcUAGGUGUUAAAGGGg -3'
miRNA:   3'- cGUAUCGU---------------UCGaAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 88606 0.81 0.956156
Target:  5'- ---aAGUAuAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU-UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 154944 0.8 0.964052
Target:  5'- cGCu--GCAcuuguucauAGCUUGGGUGUUAAAAGGu -3'
miRNA:   3'- -CGuauCGU---------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 131170 0.8 0.964052
Target:  5'- ---gAGUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 74810 0.8 0.964052
Target:  5'- uGUAUAuauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 42266 0.8 0.964052
Target:  5'- ---gAGUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 57267 0.8 0.967601
Target:  5'- ---aAGUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 109384 0.8 0.967601
Target:  5'- aGCAUAGCAAaCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUCGUUcGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 143803 0.8 0.970894
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAGAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 116971 0.8 0.970894
Target:  5'- aGCAUAuUAAGCUUAGGUGUUAAc--- -3'
miRNA:   3'- -CGUAUcGUUCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 131989 0.8 0.973941
Target:  5'- uCAUAuauAGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAUUUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.