miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 182964 0.7 0.999996
Target:  5'- uGUAUAuauAGCUUAGGUGUUAAAu-- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUucu -5'
28290 5' -42 NC_005902.1 + 182662 0.69 1
Target:  5'- uGUAU-GUAuAGCUUAGGUGUaacccuuuaaaaacUAAAAGAu -3'
miRNA:   3'- -CGUAuCGU-UCGAAUCCACA--------------AUUUUCU- -5'
28290 5' -42 NC_005902.1 + 181418 0.66 1
Target:  5'- aGCAUaaagAGUAAguauaucGCUUAGaUGUUAAAGGAu -3'
miRNA:   3'- -CGUA----UCGUU-------CGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 172845 0.87 0.765113
Target:  5'- aGCAUcGCAaauggguauauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAuCGU-----------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 171283 0.67 1
Target:  5'- --uUAGCAAcauGUUUGGG-GUUAAAGGGu -3'
miRNA:   3'- cguAUCGUU---CGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 170617 0.68 1
Target:  5'- uUAUAuauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 169573 0.75 0.998249
Target:  5'- uGCG-AGUguauAGUUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUaUCGu---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 169167 0.75 0.998249
Target:  5'- -gAUAu--AGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- cgUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 167292 0.68 1
Target:  5'- uGUAUA-UAA-CUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGUUcGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 167183 0.85 0.852073
Target:  5'- aGCGUAuauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 165748 0.79 0.98384
Target:  5'- aGCGcAGUAAGUauauguuaacUUAGGUGUUAAAGGAu -3'
miRNA:   3'- -CGUaUCGUUCG----------AAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 164721 0.69 1
Target:  5'- aUAUAGUAagaguauauAGCUUAGaUGUUAAAAGGu -3'
miRNA:   3'- cGUAUCGU---------UCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 163476 0.66 1
Target:  5'- aGUAUAGCAaacaaguauAGcCUUAGGauUUAAAGGAu -3'
miRNA:   3'- -CGUAUCGU---------UC-GAAUCCacAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 162767 0.79 0.981462
Target:  5'- aGCuAUAuGCAagugugaauauauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CG-UAU-CGU-------------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 162631 0.66 1
Target:  5'- uGUAUAu--AGCUUGGGUGUUAAc--- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 162564 0.73 0.999817
Target:  5'- aGUAUguaAGUAAGUauauagaUUAGGUGUUAAAGGGc -3'
miRNA:   3'- -CGUA---UCGUUCG-------AAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 162432 0.7 0.999996
Target:  5'- uGUGU-GUAuAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAuCGU-UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 157888 0.78 0.991865
Target:  5'- uUAUAu--AGCUUAGGUGUUAAAAGAu -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 157100 0.69 1
Target:  5'- aGCAUAGCAaauaaguauaAGCuUUAGGauUUAAAGGGu -3'
miRNA:   3'- -CGUAUCGU----------UCG-AAUCCacAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 156827 0.7 0.999998
Target:  5'- uCAUAuauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAuUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.