miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 155242 0.68 1
Target:  5'- aGCGUAuauAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 154944 0.8 0.964052
Target:  5'- cGCu--GCAcuuguucauAGCUUGGGUGUUAAAAGGu -3'
miRNA:   3'- -CGuauCGU---------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 153163 0.68 1
Target:  5'- aGUAUAGUAaauuaguauaAGCuUUAGGUaUUAAAAGAu -3'
miRNA:   3'- -CGUAUCGU----------UCG-AAUCCAcAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 151332 0.7 0.999997
Target:  5'- aUAUAGUA----UAGGUGUUAAAAGAa -3'
miRNA:   3'- cGUAUCGUucgaAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 151227 0.69 1
Target:  5'- aGUAUA-UAA-CUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGUUcGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 149064 0.7 0.999996
Target:  5'- aGCAUAGCAaauaaguauauAGCUUAGGUaaaGUauUAAuGAGAu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCA---CA--AUU-UUCU- -5'
28290 5' -42 NC_005902.1 + 148271 1.14 0.039952
Target:  5'- aGCAUAGCAAGCUUAGGUGUUAAAAGAu -3'
miRNA:   3'- -CGUAUCGUUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 146944 0.71 0.999984
Target:  5'- uGUAUAu--AGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 146763 0.73 0.999897
Target:  5'- aGUAUAuacauGGUUUAGGUGUUAGAGGGu -3'
miRNA:   3'- -CGUAUcgu--UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 144058 0.71 0.999992
Target:  5'- ---gAGUAuauAGCUUAGGUGUUAAAc-- -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUucu -5'
28290 5' -42 NC_005902.1 + 143936 0.73 0.999769
Target:  5'- ---cAGCAAGUUUAGaUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGUUCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 143803 0.8 0.970894
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAGAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 142022 0.84 0.868976
Target:  5'- uGCGU-GUAuauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAuCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 140949 0.98 0.281526
Target:  5'- aGCAUAGCAaguaaguauauAGCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 138805 0.79 0.981688
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 137785 0.66 1
Target:  5'- uGUAUAuauAGCUUAaGUGUUAAAGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUcCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 137649 0.68 1
Target:  5'- aGCAUauugaauaAGUAcauaaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUA--------UCGUuc---GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 136268 0.81 0.947157
Target:  5'- gGUAUAGCAaacaaauauauAGUUUAGGUGUUGAGAuGAa -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCACAAUUUU-CU- -5'
28290 5' -42 NC_005902.1 + 136088 0.67 1
Target:  5'- uGUAUAu--AGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 135986 0.98 0.288913
Target:  5'- aGCAUAGCAaaugaacauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUCGU---------UCGAAUCCACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.