miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 50224 0.72 0.999969
Target:  5'- ---aAGCuauauauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- cguaUCGu------UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 71688 0.72 0.999969
Target:  5'- uGUAUAu--AGCUUAGGUGUUAGAAu- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 69410 0.72 0.999958
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAAa- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 133706 0.72 0.999958
Target:  5'- -uGUAGCGAGUgagUAuGUGUUAAAGGGu -3'
miRNA:   3'- cgUAUCGUUCGa--AUcCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 29254 0.72 0.999958
Target:  5'- ---aAGUAuauAGCUUAGGUGUUAGGAu- -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 4802 0.72 0.999958
Target:  5'- aGCAUAGUGAGCaaguauauaacUUAGGaGUUAAAGGc -3'
miRNA:   3'- -CGUAUCGUUCG-----------AAUCCaCAAUUUUCu -5'
28290 5' -42 NC_005902.1 + 97747 0.72 0.999943
Target:  5'- uGCAUAu--AGCUUAGGUGUUAAu--- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 130979 0.72 0.999943
Target:  5'- ---aAGUGAaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGUUcGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 146763 0.73 0.999897
Target:  5'- aGUAUAuacauGGUUUAGGUGUUAGAGGGu -3'
miRNA:   3'- -CGUAUcgu--UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 48265 0.73 0.999897
Target:  5'- uGUAUAuauAGCUUAGGUGUUAAAAa- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 117751 0.73 0.999864
Target:  5'- uGCAaguaAGUAuaGGCUUAGGaGUUAAAAGAu -3'
miRNA:   3'- -CGUa---UCGU--UCGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 162564 0.73 0.999817
Target:  5'- aGUAUguaAGUAAGUauauagaUUAGGUGUUAAAGGGc -3'
miRNA:   3'- -CGUA---UCGUUCG-------AAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 143936 0.73 0.999769
Target:  5'- ---cAGCAAGUUUAGaUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGUUCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 8444 0.74 0.999702
Target:  5'- aGUAUAuCAaauaauAGUUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcGU------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 1439 0.74 0.999702
Target:  5'- aGCAUAGCAagugaguauauAGCUUAaGUGUUAAAGc- -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUcCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 105297 0.74 0.999702
Target:  5'- uGCAUuuguuuGUAuauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAu-----CGU---UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 50044 0.74 0.999702
Target:  5'- cGCAaugAGUGAauauaCUUAGGUGUUAAAAGAu -3'
miRNA:   3'- -CGUa--UCGUUc----GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 134355 0.74 0.999702
Target:  5'- aGCAcAGCAaaugaguauauAGCUUAaGUGUUAAAAGGg -3'
miRNA:   3'- -CGUaUCGU-----------UCGAAUcCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 67019 0.74 0.999702
Target:  5'- aGCcUAGCGaaugaguauauAGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- -CGuAUCGU-----------UCGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 15507 0.75 0.999052
Target:  5'- uGUAUAuauAGUUUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.