miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 156827 0.7 0.999998
Target:  5'- uCAUAuauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 3107 0.7 0.999997
Target:  5'- uCAUAuauAGCUUAGGUGUUAAAAu- -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 151332 0.7 0.999997
Target:  5'- aUAUAGUA----UAGGUGUUAAAAGAa -3'
miRNA:   3'- cGUAUCGUucgaAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 5215 0.7 0.999996
Target:  5'- ---gAGUAuaucGCUUAGGUGUUAGGuAGAa -3'
miRNA:   3'- cguaUCGUu---CGAAUCCACAAUUU-UCU- -5'
28290 5' -42 NC_005902.1 + 96034 0.7 0.999996
Target:  5'- uGCAUAuauaaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguucGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 149064 0.7 0.999996
Target:  5'- aGCAUAGCAaauaaguauauAGCUUAGGUaaaGUauUAAuGAGAu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCA---CA--AUU-UUCU- -5'
28290 5' -42 NC_005902.1 + 51634 0.7 0.999996
Target:  5'- aGCGUAGCGAGCUUAaaUGUaAAAAa- -3'
miRNA:   3'- -CGUAUCGUUCGAAUccACAaUUUUcu -5'
28290 5' -42 NC_005902.1 + 162432 0.7 0.999996
Target:  5'- uGUGU-GUAuAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAuCGU-UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 182964 0.7 0.999996
Target:  5'- uGUAUAuauAGCUUAGGUGUUAAAu-- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUucu -5'
28290 5' -42 NC_005902.1 + 25149 0.7 0.999995
Target:  5'- aCAUAGCAagugaguauauAGCUUAGGgGUUAAAu-- -3'
miRNA:   3'- cGUAUCGU-----------UCGAAUCCaCAAUUUucu -5'
28290 5' -42 NC_005902.1 + 116661 0.71 0.999992
Target:  5'- aGUAUaauaAGCAuauAGUUUAGGUGUUAAAcGGu -3'
miRNA:   3'- -CGUA----UCGU---UCGAAUCCACAAUUUuCU- -5'
28290 5' -42 NC_005902.1 + 144058 0.71 0.999992
Target:  5'- ---gAGUAuauAGCUUAGGUGUUAAAc-- -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUucu -5'
28290 5' -42 NC_005902.1 + 107170 0.71 0.999992
Target:  5'- aGUGUAGCAaaugaguauauAGCUUaAGG-GUUAAAAGGu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAA-UCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 15325 0.71 0.999988
Target:  5'- aUAUAuGCAauuauucauauauAGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- cGUAU-CGU-------------UCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 99651 0.71 0.999984
Target:  5'- uGUAUAu--AGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 52367 0.71 0.999984
Target:  5'- uGUAUAu--AGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 131698 0.71 0.999984
Target:  5'- aGCAUAuauauAGCUUAGGUGUUAAu--- -3'
miRNA:   3'- -CGUAUcgu--UCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 146944 0.71 0.999984
Target:  5'- uGUAUAu--AGCUUAGGUGUU-AAAGAg -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAuUUUCU- -5'
28290 5' -42 NC_005902.1 + 18779 0.71 0.999983
Target:  5'- aGCAUAGUAAacgaauauauaaCUUAGGUGUUAAAAa- -3'
miRNA:   3'- -CGUAUCGUUc-----------GAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 3478 0.71 0.999978
Target:  5'- uGUAUAu--AGCUUAGGUGUUAAAAu- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.