miRNA display CGI


Results 61 - 80 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 109951 0.71 1
Target:  5'- -aGUgaaUAUAUAGCUUAGGUcUUAAAg -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 7673 0.83 0.992192
Target:  5'- aUGcUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 122804 0.75 0.999994
Target:  5'- -----aGUAUAUAGCUUAGGggUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 54371 0.74 0.999999
Target:  5'- uUUGUguaUGUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 174500 0.73 1
Target:  5'- uUUGUUUGUAUAUAGCUUAa------- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUccaaauuu -5'
28291 5' -38.3 NC_005902.1 + 52364 0.84 0.983847
Target:  5'- --aUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 50082 0.79 0.999226
Target:  5'- ---cUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 42267 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 75849 0.76 0.999974
Target:  5'- -cGUUUGUAUAUAGUUcAGGUaUUAAAg -3'
miRNA:   3'- aaCAAACAUAUAUCGAaUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 165973 0.79 0.999628
Target:  5'- cUUGUUUGUAUAUGGCUUauguguuaaaGGGUUa--- -3'
miRNA:   3'- -AACAAACAUAUAUCGAA----------UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 110132 0.85 0.976315
Target:  5'- cUUGcUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- -AACaAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 30823 0.84 0.979066
Target:  5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 50493 0.69 1
Target:  5'- gUGUgUGUAUcUAGUUUAGGUgUUAAAg -3'
miRNA:   3'- aACAaACAUAuAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 29494 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 67389 0.67 1
Target:  5'- -aGUgUGUAUAUAGCUUaaguguuaaaAGGUUa--- -3'
miRNA:   3'- aaCAaACAUAUAUCGAA----------UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 99596 0.67 1
Target:  5'- --aUUUGUAUAUAGCUUAaGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 162754 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 20319 0.71 1
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 6346 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUUUu-- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAAAuuu -5'
28291 5' -38.3 NC_005902.1 + 170615 0.68 1
Target:  5'- --aUUUaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCA-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.