miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 110132 0.85 0.976315
Target:  5'- cUUGcUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- -AACaAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 8211 0.74 0.999999
Target:  5'- ---cUUGUAUAUAGCUUAGGcaaagUUAAu -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCa----AAUUu -5'
28291 5' -38.3 NC_005902.1 + 50493 0.69 1
Target:  5'- gUGUgUGUAUcUAGUUUAGGUgUUAAAg -3'
miRNA:   3'- aACAaACAUAuAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 109951 0.71 1
Target:  5'- -aGUgaaUAUAUAGCUUAGGUcUUAAAg -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 104200 0.75 0.999996
Target:  5'- uUUGUU--UAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 7673 0.83 0.992192
Target:  5'- aUGcUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 162625 0.92 0.756745
Target:  5'- cUUGUUUGUAUAUAGCUUGGGUg---- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 136082 0.93 0.745512
Target:  5'- cUUGUUUGUAUAUAGCUUAGGagUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 50082 0.79 0.999226
Target:  5'- ---cUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 42267 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 20153 0.77 0.99995
Target:  5'- -----cGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 125569 0.8 0.998785
Target:  5'- cUUGUUUaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 131146 0.84 0.981573
Target:  5'- aUGUucuuUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 74805 0.72 1
Target:  5'- aUGagUGUAuaUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aACaaACAU--AUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 5415 0.73 1
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 137467 0.75 0.999991
Target:  5'- aUGUuuauUUGUGUAUAGUUUAGGUa---- -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 130910 0.71 1
Target:  5'- ---aUUGUuUAUAGCUUAGGaUUUAAAg -3'
miRNA:   3'- aacaAACAuAUAUCGAAUCC-AAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 163428 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 174635 0.69 1
Target:  5'- -----aGUAUAUAGCUUAaGUUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUcCAAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 47266 0.72 1
Target:  5'- --cUUUGUAUAUAGCUUAGauGUUUGu- -3'
miRNA:   3'- aacAAACAUAUAUCGAAUC--CAAAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.