miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 142191 0.76 0.999982
Target:  5'- cUUGUUUGUAUAUAGCUUAaaagUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 45115 0.83 0.992192
Target:  5'- cUUGUUcGUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 154619 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 75849 0.76 0.999974
Target:  5'- -cGUUUGUAUAUAGUUcAGGUaUUAAAg -3'
miRNA:   3'- aaCAAACAUAUAUCGAaUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 39301 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 169577 0.7 1
Target:  5'- -----aGUGUAUAGUUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 136082 0.93 0.745512
Target:  5'- cUUGUUUGUAUAUAGCUUAGGagUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 20319 0.71 1
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 47266 0.72 1
Target:  5'- --cUUUGUAUAUAGCUUAGauGUUUGu- -3'
miRNA:   3'- aacAAACAUAUAUCGAAUC--CAAAUuu -5'
28291 5' -38.3 NC_005902.1 + 156822 0.73 1
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 174500 0.73 1
Target:  5'- uUUGUUUGUAUAUAGCUUAa------- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUccaaauuu -5'
28291 5' -38.3 NC_005902.1 + 146633 0.74 0.999998
Target:  5'- -----cGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 137467 0.75 0.999991
Target:  5'- aUGUuuauUUGUGUAUAGUUUAGGUa---- -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 167185 0.77 0.99995
Target:  5'- -----cGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 25157 0.78 0.999875
Target:  5'- -aGUgaGUAUAUAGCUUAGGggUUAAAu -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 114434 0.79 0.999226
Target:  5'- -aGUgaGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 125569 0.8 0.998785
Target:  5'- cUUGUUUaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 80773 0.83 0.989407
Target:  5'- -aGUggGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 52364 0.84 0.983847
Target:  5'- --aUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 30823 0.84 0.979066
Target:  5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.