Results 21 - 40 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28291 | 5' | -38.3 | NC_005902.1 | + | 114434 | 0.79 | 0.999226 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 125569 | 0.8 | 0.998785 |
Target: 5'- cUUGUUUaUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- -AACAAAcAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 3475 | 0.84 | 0.983847 |
Target: 5'- --aUUUGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 92196 | 0.96 | 0.616195 |
Target: 5'- aUUGUUUGUAUAUAGCUUAGGUaUUAAAu -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 184631 | 0.75 | 0.999991 |
Target: 5'- -----cGUAUAUAGCUUAGGggUUAAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 51457 | 0.77 | 0.999932 |
Target: 5'- cUUGUUUGUAUAUAGCUUaaauguuaaaGGGUa---- -3' miRNA: 3'- -AACAAACAUAUAUCGAA----------UCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 45115 | 0.83 | 0.992192 |
Target: 5'- cUUGUUcGUAUAUAGCUUAGGUg---- -3' miRNA: 3'- -AACAAaCAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 154619 | 0.96 | 0.616195 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGGUaUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 25157 | 0.78 | 0.999875 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGggUUAAAu -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 39301 | 0.96 | 0.616195 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 99649 | 0.82 | 0.995246 |
Target: 5'- ---cUUGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 165973 | 0.79 | 0.999628 |
Target: 5'- cUUGUUUGUAUAUGGCUUauguguuaaaGGGUUa--- -3' miRNA: 3'- -AACAAACAUAUAUCGAA----------UCCAAauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 80773 | 0.83 | 0.989407 |
Target: 5'- -aGUggGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 52364 | 0.84 | 0.983847 |
Target: 5'- --aUUUGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 30823 | 0.84 | 0.979066 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 136082 | 0.93 | 0.745512 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGGagUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 146633 | 0.74 | 0.999998 |
Target: 5'- -----cGUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 137467 | 0.75 | 0.999991 |
Target: 5'- aUGUuuauUUGUGUAUAGUUUAGGUa---- -3' miRNA: 3'- aACA----AACAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 156763 | 0.77 | 0.999964 |
Target: 5'- -cGUUUGUAUAUGGCUUAGauUUUAAu -3' miRNA: 3'- aaCAAACAUAUAUCGAAUCc-AAAUUu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 20153 | 0.77 | 0.99995 |
Target: 5'- -----cGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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