miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 29605 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 42267 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 167185 0.77 0.99995
Target:  5'- -----cGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 162433 0.8 0.999027
Target:  5'- ----gUGUGUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 28810 0.84 0.985903
Target:  5'- --uUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 122804 0.75 0.999994
Target:  5'- -----aGUAUAUAGCUUAGGggUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 75849 0.76 0.999974
Target:  5'- -cGUUUGUAUAUAGUUcAGGUaUUAAAg -3'
miRNA:   3'- aaCAAACAUAUAUCGAaUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 63393 0.84 0.979066
Target:  5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 97471 0.78 0.999713
Target:  5'- cUUGUUUGUAUAUAaCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 114434 0.79 0.999226
Target:  5'- -aGUgaGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 110132 0.85 0.976315
Target:  5'- cUUGcUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- -AACaAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 162625 0.92 0.756745
Target:  5'- cUUGUUUGUAUAUAGCUUGGGUg---- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 8211 0.74 0.999999
Target:  5'- ---cUUGUAUAUAGCUUAGGcaaagUUAAu -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCa----AAUUu -5'
28291 5' -38.3 NC_005902.1 + 104200 0.75 0.999996
Target:  5'- uUUGUU--UAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 20153 0.77 0.99995
Target:  5'- -----cGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 7673 0.83 0.992192
Target:  5'- aUGcUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 142021 0.83 0.987752
Target:  5'- aUGcgUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aACaaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 136082 0.93 0.745512
Target:  5'- cUUGUUUGUAUAUAGCUUAGGagUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 50082 0.79 0.999226
Target:  5'- ---cUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 27810 0.78 0.999834
Target:  5'- --aUUUGUAUAUAGCUUAGGcaUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCa-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.