Results 21 - 40 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28291 | 5' | -38.3 | NC_005902.1 | + | 29605 | 0.96 | 0.616195 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 42267 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 167185 | 0.77 | 0.99995 |
Target: 5'- -----cGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 162433 | 0.8 | 0.999027 |
Target: 5'- ----gUGUGUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 28810 | 0.84 | 0.985903 |
Target: 5'- --uUUUGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 122804 | 0.75 | 0.999994 |
Target: 5'- -----aGUAUAUAGCUUAGGggUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 75849 | 0.76 | 0.999974 |
Target: 5'- -cGUUUGUAUAUAGUUcAGGUaUUAAAg -3' miRNA: 3'- aaCAAACAUAUAUCGAaUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 63393 | 0.84 | 0.979066 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 97471 | 0.78 | 0.999713 |
Target: 5'- cUUGUUUGUAUAUAaCUUAGGUgUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUcGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 114434 | 0.79 | 0.999226 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 110132 | 0.85 | 0.976315 |
Target: 5'- cUUGcUUGUAUAUAGCUUAGGUaUUAAAg -3' miRNA: 3'- -AACaAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 162625 | 0.92 | 0.756745 |
Target: 5'- cUUGUUUGUAUAUAGCUUGGGUg---- -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 8211 | 0.74 | 0.999999 |
Target: 5'- ---cUUGUAUAUAGCUUAGGcaaagUUAAu -3' miRNA: 3'- aacaAACAUAUAUCGAAUCCa----AAUUu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 104200 | 0.75 | 0.999996 |
Target: 5'- uUUGUU--UAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- -AACAAacAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 20153 | 0.77 | 0.99995 |
Target: 5'- -----cGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 7673 | 0.83 | 0.992192 |
Target: 5'- aUGcUUGUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aACaAACAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 142021 | 0.83 | 0.987752 |
Target: 5'- aUGcgUGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- aACaaACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 136082 | 0.93 | 0.745512 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGGagUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 50082 | 0.79 | 0.999226 |
Target: 5'- ---cUUGUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aacaAACAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 27810 | 0.78 | 0.999834 |
Target: 5'- --aUUUGUAUAUAGCUUAGGcaUUAAAg -3' miRNA: 3'- aacAAACAUAUAUCGAAUCCa-AAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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