miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 20153 0.77 0.99995
Target:  5'- -----cGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 20319 0.71 1
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 22576 0.67 1
Target:  5'- cUUGUUUGcuauacuuacuUAUAUAGCcUUAGGaUUUAAAg -3'
miRNA:   3'- -AACAAAC-----------AUAUAUCG-AAUCC-AAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 23317 0.71 1
Target:  5'- -aGUgaaUAUGUAGCUUAGGUaUAAGg -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 23437 0.72 1
Target:  5'- cUUGUUUGUAUAUAGCUUGa------- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUccaaauuu -5'
28291 5' -38.3 NC_005902.1 + 23449 0.77 0.999932
Target:  5'- -aGUgaGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 23505 0.66 1
Target:  5'- ---gUUGUAUAUAGCUUaaguguuaaaGGGUUa--- -3'
miRNA:   3'- aacaAACAUAUAUCGAA----------UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 23648 0.79 0.999226
Target:  5'- -aGUgaGUAUGUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 25045 0.68 1
Target:  5'- --aUUUGUAUAUAGCUUAGa------ -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCcaaauuu -5'
28291 5' -38.3 NC_005902.1 + 25157 0.78 0.999875
Target:  5'- -aGUgaGUAUAUAGCUUAGGggUUAAAu -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 26297 0.68 1
Target:  5'- --aUUUaUAUAUAGCUUAGGUaUUAAAa -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 27700 0.66 1
Target:  5'- cUUGUUaGUAUAUAGCagccUAGGUa---- -3'
miRNA:   3'- -AACAAaCAUAUAUCGa---AUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 27810 0.78 0.999834
Target:  5'- --aUUUGUAUAUAGCUUAGGcaUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 27920 0.66 1
Target:  5'- ---cUUGUAUAUAGCUUaaguauuaaAGGUUa--- -3'
miRNA:   3'- aacaAACAUAUAUCGAA---------UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 28192 0.67 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAu -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 28810 0.84 0.985903
Target:  5'- --uUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 28961 0.68 1
Target:  5'- ----aUGcUGUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaAC-AUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 29255 0.75 0.999997
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAGGa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 29308 0.67 1
Target:  5'- -aGUaaGUAUAUGGUUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 29494 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.